Sandbox Reserved 779

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (04:40, 7 December 2013) (edit) (undo)
 
(46 intermediate revisions not shown.)
Line 3: Line 3:
<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
 +
'''β-Lactoglobulin'''
-
<big>'''β-Lactoglobulin'''</big>
+
<Structure load='1beb' size='320' frame='true' align='left' caption='3D model 1._The dimer interface of β-lactoglobulin lattice X_1BEB' scene='Insert optional scene name here' />
-
----
+
=='''β-Lactoglobulin'''==
-
 
+
-
<Structure load='1b8e' size='400' frame='true' align='right' caption='β-Lactoglobulin (β-LG) (Isoforms A and B)in Orthorombic space group' scene='Insert optional scene name here' />
+
-
 
+
-
<scene name='56/564055/Native_beta-lactoglobulin/1'>Native_beta-lactoglobulin</scene>
+
-
 
+
-
 
+
-
 
+
-
== Introduction ==
+
-
 
+
-
β-Lactoglobulin (β-LG)is the major whey protein of cow’s milk with a concentration of 0.3 g/100 mL <ref>PMID:14254409</ref> and was first isolated in 1934 <ref>http://www.jbc.org/content/104/2/359.citation</ref>. It is a globular protein consisting of 162 AA with a relative molecular mass of 18.4 kDa.
+
-
 
+
-
Its amino-acid sequence and 3-dimensional structure show that it is a lipocalin, a widely diverse family, most of which bind small hydrophobic ligands and thus may act as specific transporters, as does serum retinol binding protein <ref>PMID:15259212</ref>.
+
-
 
+
-
 
+
-
 
+
-
 
+
-
 
+
-
Under physiological conditions beta-lactoglobulin exists as an equilibrium mixture of monomeric and dimeric forms.
+
-
Subcellular location: Secreted.
+
-
Tissue specificity: Synthesized in mammary gland and secreted in milk.
+
-
Post-translational modification : Alternate disulfide bonds occur in equal amounts in all variants examined.
+
-
Allergenic properties:Causes an allergic reaction in human. Is one of the causes of cow's milk allergy.
+
-
Miscellaneous The B variant sequence is shown.
+
-
 
+
-
 
+
-
Bovine b-lactoglobulin (β-Lg) is a much studied and commercially important whey protein with an as yet undetermined function,although it is of obvious nutritional value. b-Lg binds a variety of ligands and by comparison of the general structures of these
+
-
molecules together with several competition studies, it appears that there are at least 3 independent binding sites. In the absence of direct crystallographic evidence, a preliminary modelling study reveals that there is an internal cavity which can readily accommodate retinol in a manner similar to the related lipocalin, retinol-binding protein. On the outer surface, a solvent-accessible hydrophobic cleft runs between the 3-turn a-helix that is packed against the outer surface of the b-barrel. This cleft can accommodate fatty acids like palmitate and stearate.
+
-
<ref>http://www.sciencedirect.com/science/article/pii/S0958694698000211</ref>
+
-
 
+
-
 
+
-
 
+
-
β-Lactoglobulin is a small protein, soluble in dilute salt solution as befits a globulin, with 162 amino acid residues (Mr ∼18,400) that fold up into an 8-stranded, antiparallel β-barrel with a 3-turn α-helix on the outer surface and a ninth β-strand flanking the first strand.
+
-
 
+
-
Function:Primary component of whey, it binds retinol and is probably involved in the transport of that molecule.<ref>PMID:15259212</ref>.
+
-
 
+
-
[[Image:Beta_lac_2Q2M.png|thumb|right|320px|Bovine Beta-Lactoglobulin Native]]
+
-
 
+
-
===Background ===
+
-
class of protein :Belongs to the calycin superfamily. Lipocalin family.
+
-
overall function of Lipocalin family: The lipocalins are a family of proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids.
+
-
Lipocalins have been associated with many biological processes, among them immune response, pheromone transport, biological prostaglandin synthesis, retinoid binding, and cancer cell interactions.
+
-
 
+
-
organisms:These proteins are found in gram negative bacteria, vertebrate cells, and invertebrate cells, and in plants.
+
 +
β-Lactoglobulin (β-LG) was first isolated in 1934.<ref>http://www.jbc.org/content/104/2/359.citation</ref> It is the main globular protein of whey, a by-product from cow milk-cheese manufacture. Cow milk itself contains 20% whey proteins and 80% casein protein. β-Lactoglobulin constitutes 50-65% dry solids whey protein or 12% of whole cow milk proteins.
 +
Due to its abundance, and relatively easy to isolate nature, β-Lactoglobulin used widely in Industry to increase the protein contents of the food and beverage products.
 +
Bovine β-lactoglobulin (β-Lg) is a commercially important whey protein with undetermined biological function, although it is of obvious nutritional value.
 +
β-Lg binds a variety of ligands, and it appears that there are at least 3 independent binding sites: calyx, putative grove, and dimer interface (Fig. 2).<ref>http://www.sciencedirect.com/science/article/pii/S0958694698000211</ref><ref>PMID:9867826</ref>
 +
β-Lactoglobulin amino-acid sequence and 3-dimensional structure show that it belongs to [[Lipocalin]] family which capable of binding hydrophobic ligands and thus may act as specific transporters, as does serum retinol binding protein. <ref>PMID:15259212</ref> Bovine β-Lactoglobulin is synthesized in cow mammary gland and secreted in the milk. It causes an allergic reaction in human and is one of the causes of cow's milk allergy.
===Lipocalin Proteins===
===Lipocalin Proteins===
-
Lipocalins are typically small (160-180 residues in length), extracellular proteins sharing several common molecular recognition properties: the binding of small, principally hydrophobic molecules (such as retinol); binding to specific cell-surface receptors; and the formation of covalent and non-covalent complexes with other soluble macromolecules. Although they have been classified mainly as transport proteins
+
β-Lactoglobulin belongs to the calycin superfamily and Lipocalin family. Lipocalins are typically small (160-180 residues in length), extracellular proteins and able to bind small hydrophobic molecules (such as retinol); bind to specific cell-surface receptors; and form of covalent and non-covalent complexes with other soluble macromolecules. Lipocalin proteins have also been classified mainly as transport proteins.
<ref>PMID:11058743</ref>
<ref>PMID:11058743</ref>
-
The lipocalin family is a large and diverse family of proteins with functions varying from insect camouflage to small hydrophobic molecule transport typified by the serum retinol-binding protein <ref>http://www.biochemj.org/bj/318/bj3180001.htm</ref>(http://www.biochemj.org/bj/318/0001/3180001.pdf). The crystal structures so far determined reveal the typical lipocalin to be an eight-stranded antiparallel β-barrel arranged to form a conical central calyx or cavity in which the hydrophobic ligand is located.<ref>PMID:6540172</ref>
+
The lipocalin family is a large and diverse family of proteins with functions varying from insect camouflage to small hydrophobic molecule transport typified by the serum retinol-binding protein <ref>http://www.biochemj.org/bj/318/bj3180001.htm</ref> The crystal structures so far determined reveal the typical lipocalin to be an eight-stranded antiparallel β-barrel arranged to form a conical central calyx or cavity in which the hydrophobic ligand is located.<ref>PMID:6540172</ref>
-
<ref>PMID:9867826</ref>
+
-
== Structure of β-LG ==
+
[[Image:Beta_lac_Residues.jpg|thumb|right|320px|Figure 1. Primary structure of β-LG. β-Lactoglobulin comprises 162 AA, including 5 Cys residues. Two disulfide linkages are located at residues Cys-106 to Cys-119 and Cys-66 to Cys-160. One free Cys is at position 121.(Taken from Liu, et al. 2007)<ref>PMID:17235131</ref>]]
 +
[[Image:General_view_of_beta_lactoglobulin.jpg|thumb|left|320px|Figure 2. A general view of b-lactoglobulin, a typical lipocalin. The binding site (filled atoms) is shown in the central calyx, and the putative binding site (open atoms) is indicated on the outer surface of the protein. The structurally conserved regions are at the rear of the molecule on strand A, the FG loop, and the loop before the a-helix.(Wu S et al. J. Biol. Chem. 1999;274:170-174)<ref>PMID:9867826</ref>]]
 +
=='''Structure of β-Lactoglobulin'''==
-
overall description of the structure of the protein:
+
β-Lactoglobulin is a small globulin protein, soluble in dilute salt solution with 162 amino acid residues (Mr ∼18,400 Daltons) for each monomer that fold up into an 8-stranded, antiparallel β-barrel with a 3-turn α-helix on the outer surface and a ninth β-strand flanking the first strand.
-
a. oligomeric state
+
-
b. description of secondary structure
+
-
c. description of active residues of the protein and where they are on the protein
+
-
d. description of any ligands in the structure
+
-
e. methods used to solve the structure : X-ray crystallography, NMR, EM
+
 +
===Residues and secondary structures===
 +
β-Lactoglobulin contains two disulfide bonds (Cys 66–Cys 160 and Cys 106–Cys 119) and a free thiol (Cys 121)(Fig. 1). Structures of βLG have been reported by several groups with X-ray crystallography and solution NMR, that it is predominantly β-sheet protein. The β-barrel, or so called calyx, is conical and is made of two β-sheets: the B–D strands and N-terminal half of the A strand (denoted AN) form one sheet, and the E–H strands and C-terminal half of the A strand (denoted AC) form the other. On the outer surface of the β-barrel, between the G and H strands, is the 3-turn α-helix. The loops that connect the β-strands at the closed end of the calyx, BC, DE, and FG, are generally quite short, whereas those at the open end, AB, CD, EF,and GH, are significantly longer and more flexible. In the calyx, there is a large central cavity which is surrounded by hydrophobic residues and is accessible to solvent. This cavity provides the principal ligand-binding site (Fig. 2). <ref>PMID:19362581</ref>
-
At physiological conditions, bovine b-lactoglobulin forms a dimer, with each monomer consisting of 162 amino acid residues and characterized by a molecular mass of 18,350. Below pH 3, the dimer dissociates into monomers which preserve their native conformation. Genetically, b-lactoglobulin may exist as one of several variants, among which the variants A and B are the most abundant. The A and B variants of the protein differ from each other by amino acid residues at positions Asp64 (Gly64 in variant B) and Val118 (Ala118 in variant B). These differences in primary structure render the two variants slightly different with respect to isoelectric point, solubility, self-association properties, as well as pressure and temperature stability. However, the structural characteristics of the A and B variants of bovine b-lactoglobulin are virtually indistinguishable. In its native state, b-lactoglobulin is a predominantly b-sheet protein containing nine b-strands and three a-helices. The core of the protein is formed by a flattened b-barrel (a calyx) composed of eight antiparallel b-strands (A to H).<ref>PMID:11734004</ref>
+
===Genetic Variants===
 +
Genetically, β-lactoglobulin may exist as one of several variants, among which the variants A and B are the most abundant. The A and B variants of the protein differ from each other by amino acid residues at positions Asp64 (Gly64 in variant B) and Val118 (Ala118 in variant B). These differences in primary structure render the two variants slightly different with respect to isoelectric point, solubility, self-association properties, as well as pressure and temperature stability. However, the structural characteristics of the A and B variants of bovine b-lactoglobulin are virtually indistinguishable. In its native state, β-lactoglobulin is a predominantly β-sheet protein containing nine b-strands and three a-helices. The core of the protein is formed by a flattened b-barrel (a calyx) composed of eight antiparallel b-strands (A to H).<ref>PMID:11734004</ref>
 +
[[Image:BLG_Dimer_1BEB_Chain_A&B.png|thumb|right|240px|Figure 3. Bovine β-Lactoglobulin Dimer_[[1BEB]]]]
 +
===Dimer/Monomer===
 +
At physiological conditions, majority of bovine b-lactoglobulin forms a dimer (Fig. 3). Below pH 3, the dimer dissociates into monomers which maintain their native conformation.
 +
Dimeric Lactoglobulin molecules exist in the open conformation at basic pH, whereas they exist in the closed conformation at acidic pH, after undergoing Tanford transition around neutral pH.<ref>PMID:17932936</ref>
-
βLG consists of 162 amino acid residues (18 kDa), containing two disulfide bonds (Cys 66–Cys 160 and Cys 106–Cys 119) and a free thiol (Cys 121). Structures of βLG have been reported by several groups with X-ray crystallography [19–21] and solution NMR [29,40,41] (Fig. 1A). It is a predominantly β-sheet protein. The β-barrel, or so called calyx, is conical and is made of two β-sheets: the B–D strands and N-terminal half of the A strand (denoted AN) form one sheet, and the E–H strands and C-terminal half of the A strand (denoted AC)form the other (Fig. 1B). On the outer surface of the β-barrel, between the G and H strands, is the 3-turn α-helix. The loops that connect the β-strands at the closed end of the calyx, BC, DE, and FG,are generally quite short, whereas those at the open end, AB, CD, EF,and GH, are significantly longer and more flexible [19]. In the calyx,there is a large central cavity which is surrounded by hydrophobic residues and is accessible to solvent. This cavity provides the principal ligand-binding site. βLG contains two tryptophan residues,Trp 19 on the A strand and Trp 61 on the C strand. The former is buried in the hydrophobic core whereas the latter is exposed to the
+
===Ligands and Active sites===
-
solvent in the native structure, making them useful probes for monitoring site-specific conformational changes. In addition, studies on the monomer–dimer equilibrium [30,32,42,43] and the reactivity of the thiol group of Cys121 deeply buried between the α-helix and H strand [44–48] revealed other important properties of βLG.<ref>PMID:19362581</ref>
+
The true function of β-Lg is unknown, but it has been suggested that it is involved in the transport of retinol and/or fatty acids. It binds retinol with a higher affinity than does RBP. β-Lg contains two tryptophans, Trp 19 on the A strand and Trp 61 on the C strand. The former is buried in the hydrophobic core whereas the latter is exposed to the solvent in the native structure, making them useful probes for monitoring site-specific conformational changes<ref>PMID:19362581</ref> and their fluorescence is altered when retinol is bound.<ref>PMID:9115437</ref>
 +
Co-crystallized β-Lg with palmitic acid (3D Model 2._1B0O) and the refined structure reveals that the ligand binds in the central cavity in a manner similar to the binding of retinol to the related lipocalin, serum retinol-binding protein. The carboxyl group binds to both Lys-60 and Lys-69 at the entrance to the cavity. The hydrophobic tail stretches in an almost fully extended conformation into the center of the protein.<ref>PMID:9867826</ref>
 +
In addition, studies on the monomer–dimer equilibrium and the reactivity of the thiol group of Cys121 which deeply buried between the α-helix and H strand revealed other important properties of β-LG. The stability of the structure also depend so heavily upon the external loop around residue 64 or the β strand with the free thiol.<ref>PMID:9115437</ref>
 +
[[Image:Vitamin D3 binding to the beta-lac calyx and dimer interface.jpg|thumb|left|240px|Figure 4. Vitamin D3 binding to the beta-lac calyx and dimer interface (Dominguez-Ramirez et al, 2013)<ref>PMID:24255705</ref>]]
 +
β-Lg has binding sites for hydrophobic ligands like fatty acids, retinoic acid, and Vitamin D3 (cholecalciferol) and lactose [[ligands]] <ref>PMID:24255705</ref> For hydrophobic ligands two sites have been postulated, one inside the calyx and the other at the dimer interface, on the outer surface of the protein between the α-helix and the β-barrel (Fig. 4). The accessibility to the calyx is pH-dependent.
 +
NMR and Xray analysis showed that the access is mediated by the mobile EF loop. All the structures with ligands bound to the calyx exhibit an open EF loop, suggesting that this site is accessible at neutral pH.
 +
<Structure load='1b0o' size='320' frame='true' align='right' caption='3D model 2._β-lactoglobulin complexed with Palmitate, lattice Z_1B0O' scene='Insert optional scene name here' />
 +
====Biological function====
 +
Besides as binding protein, β-Lg is also assumed to have a transporter function especially for several ligands through the digestive tract in, as the calyx can protect any ligands entered/bound to the cavity.<ref>PMID:15259212</ref>.
-
===secondary structure elements===
+
=='''Molecular mechanism of the Tanford transition'''==
-
protein fold and how thats important for the function
+
The Tanford transition is a conformational change of bovine β-lactoglobulin occurring at around pH 7, identified originally on the basis of optical rotatory dispersion and the accessibility of a thiol group. X-ray analysis has suggested that a conformational change to the EF-loop (residues I84 -N90) (Fig. 5) is responsible for the Tanford transition, with the loop closing the hydrophobic cavity of the β-barrel of the β-LG molecule below pH 7 and flipping to open the cavity above pH 7.<ref>PMID:16368109</ref>Tanford transition is triggered by protonation of Glu89 exhibiting an anomalously high pKa value.
-
ligands if theres ligands
+
The Tanford transition may involve some other structural changes as well. For example, the transition is accompanied by a change in the microenvironment of Tyr42 and causes an alteration in the relative orientation of monomers in the dimer by as much as 5 degrees, which breaks a number of intersubunit hydrogen bonds. <ref>PMID:11734004</ref>
-
the active site if relevant
+
[[Image:BLG_monomer_showing_EF_Loop.png|thumb|left|240px|Figure 5. Bovine β-Lactoglobulin Monomer showing EF loop (colored yellow)]]
-
features of protein that are important for function
+
-
zoom in on the active site, label the important active site residues, and highlight those residues in a different color (make it look pretty)
+
 +
The structures of the trigonal crystal form of bovine β-lactoglobulin variant A at pH 6.2, 7.1, and 8.2 have been determined by X-ray diffraction methods. The glutamate side chain of residue 89 is buried at pH 6.2 and becomes exposed at pH 7.1 and 8.2. This conformational change, involving the loop 84-90, provides a structural basis for a variety of pH-dependent chemical, physical, and spectroscopic phenomena, collectively known as the Tanford transition.<ref>PMID:9760236</ref>It was found that the stereochemical environment of Tyr42 changes significantly with pH variation between pH 7 and pH 8. This may provide a structural explanation for an as yet unexplained feature of the Tanford transition, namely the increase in exposure of a tyrosine residue.<ref>PMID:11168385</ref>
-
==Mechanism of action==
+
=='''Uses / Application'''==
-
===Molecular mechanism of the Tanford transition===
+
===Food Industry and Pharmacy===
-
Above pH 6.5, b-lactoglobulin undergoes the so-called Tanford transition which is triggered by protonation of Glu89 exhibiting an anomalously
+
-
high pKa value. The Tanford transition involves displacement of the loop EF (residues 85 to 90) that acts as a lid which closes the protein interior/binding site below pH 7.3 and opens it at higher pH. The Tanford transition may involve some other structural changes as well. For example, the transition is accompanied by a change in the microenvironment of Tyr428 and causes an alteration in the relative orientation of monomers in the dimer by as much as 5 degrees. It should be noted that all transitions that take place between pH 2 and pH 9 do not cause any appreciable changes in the nativelike b-barrel conformation of b-lactoglobulin.
+
-
<ref>PMID:11734004</ref>
+
-
The structures of the trigonal crystal form of bovine beta-lactoglobulin variant A at pH 6.2, 7.1, and 8.2 have been determined by X-ray diffraction methods at a resolution of 2.56, 2. 24, and 2.49 A, respectively. The glutamate side chain of residue 89 is buried at pH 6.2 and becomes exposed at pH 7.1 and 8.2. This conformational change, involving the loop 85-90, provides a structural basis for a variety of pH-dependent chemical, physical, and spectroscopic phenomena, collectively known as the Tanford transition.<ref>PMID:9760236</ref>
+
β-Lactoglobulin interaction with hydrophobic molecules and with other proteins, and its sensitivity to chemical, thermal and baric denaturation, all with a view to establishing relationships among structure, properties and functionality and its potential use in food and pharmacy industry.<ref>http://www.sciencedirect.com/science/article/pii/S0958694698000211</ref>
 +
Food Industry has been widely utilize β-LG to increase functionality (sensory, texture, nutritional) in commercial food and beverages application, and also as inexpensive source of protein to increase the overall protein content of their product. Pharmacy Industry is recently investigating and developing design of drugs that utilize β-LG as vehicle to transport antioxidants, drugs and vitamins to the gut.<ref>http://www.faqs.org/patents/app/20110038942</ref>
-
It was found that the stereochemical environment of Tyr42 changes significantly with pH variation between pH 7 and pH 8. This may provide a structural explanation for an as yet unexplained feature of the Tanford transition, namely the increase in exposure of a tyrosine residue.<ref>PMID:11168385</ref>
+
===Antioxidant Nature===
-
Dimeric Lactoglobulin molecules exist in the open conformation at basic pH, whereas they exist in the closed conformation at acidic pH, after undergoing Tanford transition around neutral pH.<ref>PMID:17932936</ref>
+
In the dairy industry, bovine milk is frequently heated for pasteurization (62.5°C for 30 min) and sterilization. This heating process may induce oxidative losses of proteins, unsaturated lipids, vitamins, active enzymes, and immunological factors. Cross-linking the free thiol groups of β-LG by heating (100 °C for 2 min), or chemically modifying the β-LG by carboxymethylation to block the thiol groups resulted in a substantial loss of antioxidant activity. The data suggest that Cys-121 plays an essential role in the antioxidant nature of β-LG. Because β-LG is extremely sensitive to thermal denaturation, to maintain its antioxidant nature, dairy products consumed daily should not be overheated in order to maintain its antioxidant nature.<ref>PMID:17235131</ref>
 +
Whey Protein whose majority constituent is β-Lactoglobulin, gives abundant source of branched chain amino acids especially Leucine which plays a key role in initiating transcription of protein synthesis that speed recovery and adaptation to stress (exercise) and also a free thiol Cys which is (postulated) utilized in the body to generate antioxidant glutathione.<ref>http://www.kettlercise.com/members-area/supplements/whey-protein.html</ref>
-
The Tanford transition is a conformational change of bovine beta-lactoglobulin (betaLG) occurring at around pH 7, identified originally on the basis of optical rotatory dispersion and the accessibility of a thiol group. X-ray analysis has suggested that a conformational change to the EF-loop is responsible for the Tanford transition, with the loop closing the hydrophobic cavity of the beta-barrel of the betaLG molecule below pH 7 and flipping to open the cavity above pH 7.<ref>PMID:16368109</ref>
 
-
==Implications or possible application==
+
=='''Other β-Lactoglobulin related 3D structures and complexes'''==
-
Retinol Binding
+
[[2q2m]] - Bovine β-Lactoglobulin Native (Fig. 4)
-
Ever since the fortuitous observation that beta-lactoglobulin (beta-Lg), the major whey protein in the milk of ruminants, bound retinol, the details of the binding have been controversial. beta-Lg is a lipocalin, like plasma retinol-binding protein, so that ligand association was expected to make use of the central cavity in the protein.<ref>PMID:12054801</ref>
+
-
Antioxidant Nature
+
[[1b8e]] - Crystal structure of the Bovine β-Lactoglobulin (Isoforms A and B) in orthorombic space group
-
Cross-linking the free thiol groups of beta-LG by heating (100 degrees C for 2 min), or chemically modifying the beta-LG by carboxymethylation to block the thiol groups resulted in a substantial loss of antioxidant activity. The data suggest that Cys-121 plays an essential role in the antioxidant nature of beta-LG.<ref>PMID:17235131</ref>
+
 +
[[1qg5]] - Crystal structure of the Bovine β-Lactoglobulin (Isoforms A)
 +
[[1beb]] - Bovine β-Lactoglobulin, Lattice X
 +
[[1cj5]] - Bovine β-Lactoglobulin A
-
==Other β-Lactoglobulin 3D Structures and complexes==
+
[[1gx8]] - Bovine β-Lactoglobulin complexed with Retinol, Trigonal Lattice Z
-
[[1b8e]] - Crystal structure of the Bovine beta-Lactoglobulin (Isoforms A and B) in orthorombic space group
+
[[1gx9]] - Bovine β-Lactoglobulin complexed with Retinoic acid, Trigonal Lattice Z
-
[[1qg5]] - Crystal structure of the Bovine beta-Lactoglobulin (Isoforms A)
+
[[1gxa]] - Bovine β-Lactoglobulin complexed with Retinol and Palmitic acid, Trigonal Lattice Z
-
[[1beb]] - Bovine beta-Lactoglobulin, Lattice X
+
[[1b0o]] - Bovine β-Lactoglobulin complexed with Palmitate, Lattice Z
-
[[1cj5]] - Bovine beta-Lactoglobulin A
+
[[1bsy]] [[2blg]] [[3blg]] - Structural Basis of the Tanford Transitioon of Bovine β-Lactoglobulin from crystal structures at 3 pH values
-
[[1gx8]] - Bovine beta-Lactoglobulin complexed with Retinol, Trigonal Lattice Z
+
=='''References'''==
-
 
+
-
[[1gx9]] - Bovine beta-Lactoglobulin complexed with Retinoic acid, Trigonal Lattice Z
+
-
 
+
-
[[1gxa]] - Bovine beta-Lactoglobulin complexed with Retinol and Palmitic acid, Trigonal Lattice Z
+
-
 
+
-
[[1b0o]] - Bovine beta-Lactoglobulin complexed with Palmitate, Lattice Z
+
-
 
+
-
[[1bsy]] [[2blg]] [[3blg]] - Structural Basis of the Tanford Transitioon of Bovine beta-Lactoglobulin from crystal structures at 3 pH values
+
-
 
+
-
 
+
-
== References ==
+
<references/>
<references/>
-
== Proteopedia Page Contributors and Editors ==
+
=='''Proteopedia Page Contributors and Editors'''==
[[User:Rini Triani|Rini Triani]]
[[User:Rini Triani|Rini Triani]]
- 
- 
[[Category:Bos taurus]]
[[Category:Bos taurus]]
[[Category:Lipocalin]]
[[Category:Lipocalin]]

Current revision

[[Image:Example.jpg]

This Sandbox is Reserved from Sep 25, 2013, through Mar 31, 2014 for use in the course "BCH455/555 Proteins and Molecular Mechanisms" taught by Michael B. Goshe at the North Carolina State University. This reservation includes Sandbox Reserved 299, Sandbox Reserved 300 and Sandbox Reserved 760 through Sandbox Reserved 779.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

β-Lactoglobulin

3D model 1._The dimer interface of β-lactoglobulin lattice X_1BEB

Drag the structure with the mouse to rotate

Contents

β-Lactoglobulin

β-Lactoglobulin (β-LG) was first isolated in 1934.[1] It is the main globular protein of whey, a by-product from cow milk-cheese manufacture. Cow milk itself contains 20% whey proteins and 80% casein protein. β-Lactoglobulin constitutes 50-65% dry solids whey protein or 12% of whole cow milk proteins. Due to its abundance, and relatively easy to isolate nature, β-Lactoglobulin used widely in Industry to increase the protein contents of the food and beverage products. Bovine β-lactoglobulin (β-Lg) is a commercially important whey protein with undetermined biological function, although it is of obvious nutritional value. β-Lg binds a variety of ligands, and it appears that there are at least 3 independent binding sites: calyx, putative grove, and dimer interface (Fig. 2).[2][3] β-Lactoglobulin amino-acid sequence and 3-dimensional structure show that it belongs to Lipocalin family which capable of binding hydrophobic ligands and thus may act as specific transporters, as does serum retinol binding protein. [4] Bovine β-Lactoglobulin is synthesized in cow mammary gland and secreted in the milk. It causes an allergic reaction in human and is one of the causes of cow's milk allergy.

Lipocalin Proteins

β-Lactoglobulin belongs to the calycin superfamily and Lipocalin family. Lipocalins are typically small (160-180 residues in length), extracellular proteins and able to bind small hydrophobic molecules (such as retinol); bind to specific cell-surface receptors; and form of covalent and non-covalent complexes with other soluble macromolecules. Lipocalin proteins have also been classified mainly as transport proteins. [5]

The lipocalin family is a large and diverse family of proteins with functions varying from insect camouflage to small hydrophobic molecule transport typified by the serum retinol-binding protein [6] The crystal structures so far determined reveal the typical lipocalin to be an eight-stranded antiparallel β-barrel arranged to form a conical central calyx or cavity in which the hydrophobic ligand is located.[7]

Figure 1. Primary structure of β-LG. β-Lactoglobulin comprises 162 AA, including 5 Cys residues. Two disulfide linkages are located at residues Cys-106 to Cys-119 and Cys-66 to Cys-160. One free Cys is at position 121.(Taken from Liu, et al. 2007)
Figure 1. Primary structure of β-LG. β-Lactoglobulin comprises 162 AA, including 5 Cys residues. Two disulfide linkages are located at residues Cys-106 to Cys-119 and Cys-66 to Cys-160. One free Cys is at position 121.(Taken from Liu, et al. 2007)[8]
Figure 2. A general view of b-lactoglobulin, a typical lipocalin. The binding site (filled atoms) is shown in the central calyx, and the putative binding site (open atoms) is indicated on the outer surface of the protein. The structurally conserved regions are at the rear of the molecule on strand A, the FG loop, and the loop before the a-helix.(Wu S et al. J. Biol. Chem. 1999;274:170-174)
Figure 2. A general view of b-lactoglobulin, a typical lipocalin. The binding site (filled atoms) is shown in the central calyx, and the putative binding site (open atoms) is indicated on the outer surface of the protein. The structurally conserved regions are at the rear of the molecule on strand A, the FG loop, and the loop before the a-helix.(Wu S et al. J. Biol. Chem. 1999;274:170-174)[9]

Structure of β-Lactoglobulin

β-Lactoglobulin is a small globulin protein, soluble in dilute salt solution with 162 amino acid residues (Mr ∼18,400 Daltons) for each monomer that fold up into an 8-stranded, antiparallel β-barrel with a 3-turn α-helix on the outer surface and a ninth β-strand flanking the first strand.

Residues and secondary structures

β-Lactoglobulin contains two disulfide bonds (Cys 66–Cys 160 and Cys 106–Cys 119) and a free thiol (Cys 121)(Fig. 1). Structures of βLG have been reported by several groups with X-ray crystallography and solution NMR, that it is predominantly β-sheet protein. The β-barrel, or so called calyx, is conical and is made of two β-sheets: the B–D strands and N-terminal half of the A strand (denoted AN) form one sheet, and the E–H strands and C-terminal half of the A strand (denoted AC) form the other. On the outer surface of the β-barrel, between the G and H strands, is the 3-turn α-helix. The loops that connect the β-strands at the closed end of the calyx, BC, DE, and FG, are generally quite short, whereas those at the open end, AB, CD, EF,and GH, are significantly longer and more flexible. In the calyx, there is a large central cavity which is surrounded by hydrophobic residues and is accessible to solvent. This cavity provides the principal ligand-binding site (Fig. 2). [10]

Genetic Variants

Genetically, β-lactoglobulin may exist as one of several variants, among which the variants A and B are the most abundant. The A and B variants of the protein differ from each other by amino acid residues at positions Asp64 (Gly64 in variant B) and Val118 (Ala118 in variant B). These differences in primary structure render the two variants slightly different with respect to isoelectric point, solubility, self-association properties, as well as pressure and temperature stability. However, the structural characteristics of the A and B variants of bovine b-lactoglobulin are virtually indistinguishable. In its native state, β-lactoglobulin is a predominantly β-sheet protein containing nine b-strands and three a-helices. The core of the protein is formed by a flattened b-barrel (a calyx) composed of eight antiparallel b-strands (A to H).[11]

Figure 3. Bovine β-Lactoglobulin Dimer_1BEB
Figure 3. Bovine β-Lactoglobulin Dimer_1BEB

Dimer/Monomer

At physiological conditions, majority of bovine b-lactoglobulin forms a dimer (Fig. 3). Below pH 3, the dimer dissociates into monomers which maintain their native conformation. Dimeric Lactoglobulin molecules exist in the open conformation at basic pH, whereas they exist in the closed conformation at acidic pH, after undergoing Tanford transition around neutral pH.[12]

Ligands and Active sites

The true function of β-Lg is unknown, but it has been suggested that it is involved in the transport of retinol and/or fatty acids. It binds retinol with a higher affinity than does RBP. β-Lg contains two tryptophans, Trp 19 on the A strand and Trp 61 on the C strand. The former is buried in the hydrophobic core whereas the latter is exposed to the solvent in the native structure, making them useful probes for monitoring site-specific conformational changes[13] and their fluorescence is altered when retinol is bound.[14] Co-crystallized β-Lg with palmitic acid (3D Model 2._1B0O) and the refined structure reveals that the ligand binds in the central cavity in a manner similar to the binding of retinol to the related lipocalin, serum retinol-binding protein. The carboxyl group binds to both Lys-60 and Lys-69 at the entrance to the cavity. The hydrophobic tail stretches in an almost fully extended conformation into the center of the protein.[15] In addition, studies on the monomer–dimer equilibrium and the reactivity of the thiol group of Cys121 which deeply buried between the α-helix and H strand revealed other important properties of β-LG. The stability of the structure also depend so heavily upon the external loop around residue 64 or the β strand with the free thiol.[16]

Figure 4. Vitamin D3 binding to the beta-lac calyx and dimer interface (Dominguez-Ramirez et al, 2013)
Figure 4. Vitamin D3 binding to the beta-lac calyx and dimer interface (Dominguez-Ramirez et al, 2013)[17]

β-Lg has binding sites for hydrophobic ligands like fatty acids, retinoic acid, and Vitamin D3 (cholecalciferol) and lactose ligands [18] For hydrophobic ligands two sites have been postulated, one inside the calyx and the other at the dimer interface, on the outer surface of the protein between the α-helix and the β-barrel (Fig. 4). The accessibility to the calyx is pH-dependent. NMR and Xray analysis showed that the access is mediated by the mobile EF loop. All the structures with ligands bound to the calyx exhibit an open EF loop, suggesting that this site is accessible at neutral pH.

3D model 2._β-lactoglobulin complexed with Palmitate, lattice Z_1B0O

Drag the structure with the mouse to rotate

Biological function

Besides as binding protein, β-Lg is also assumed to have a transporter function especially for several ligands through the digestive tract in, as the calyx can protect any ligands entered/bound to the cavity.[19].

Molecular mechanism of the Tanford transition

The Tanford transition is a conformational change of bovine β-lactoglobulin occurring at around pH 7, identified originally on the basis of optical rotatory dispersion and the accessibility of a thiol group. X-ray analysis has suggested that a conformational change to the EF-loop (residues I84 -N90) (Fig. 5) is responsible for the Tanford transition, with the loop closing the hydrophobic cavity of the β-barrel of the β-LG molecule below pH 7 and flipping to open the cavity above pH 7.[20]Tanford transition is triggered by protonation of Glu89 exhibiting an anomalously high pKa value. The Tanford transition may involve some other structural changes as well. For example, the transition is accompanied by a change in the microenvironment of Tyr42 and causes an alteration in the relative orientation of monomers in the dimer by as much as 5 degrees, which breaks a number of intersubunit hydrogen bonds. [21]

Figure 5. Bovine β-Lactoglobulin Monomer showing EF loop (colored yellow)
Figure 5. Bovine β-Lactoglobulin Monomer showing EF loop (colored yellow)

The structures of the trigonal crystal form of bovine β-lactoglobulin variant A at pH 6.2, 7.1, and 8.2 have been determined by X-ray diffraction methods. The glutamate side chain of residue 89 is buried at pH 6.2 and becomes exposed at pH 7.1 and 8.2. This conformational change, involving the loop 84-90, provides a structural basis for a variety of pH-dependent chemical, physical, and spectroscopic phenomena, collectively known as the Tanford transition.[22]It was found that the stereochemical environment of Tyr42 changes significantly with pH variation between pH 7 and pH 8. This may provide a structural explanation for an as yet unexplained feature of the Tanford transition, namely the increase in exposure of a tyrosine residue.[23]

Uses / Application

Food Industry and Pharmacy

β-Lactoglobulin interaction with hydrophobic molecules and with other proteins, and its sensitivity to chemical, thermal and baric denaturation, all with a view to establishing relationships among structure, properties and functionality and its potential use in food and pharmacy industry.[24] Food Industry has been widely utilize β-LG to increase functionality (sensory, texture, nutritional) in commercial food and beverages application, and also as inexpensive source of protein to increase the overall protein content of their product. Pharmacy Industry is recently investigating and developing design of drugs that utilize β-LG as vehicle to transport antioxidants, drugs and vitamins to the gut.[25]

Antioxidant Nature

In the dairy industry, bovine milk is frequently heated for pasteurization (62.5°C for 30 min) and sterilization. This heating process may induce oxidative losses of proteins, unsaturated lipids, vitamins, active enzymes, and immunological factors. Cross-linking the free thiol groups of β-LG by heating (100 °C for 2 min), or chemically modifying the β-LG by carboxymethylation to block the thiol groups resulted in a substantial loss of antioxidant activity. The data suggest that Cys-121 plays an essential role in the antioxidant nature of β-LG. Because β-LG is extremely sensitive to thermal denaturation, to maintain its antioxidant nature, dairy products consumed daily should not be overheated in order to maintain its antioxidant nature.[26] Whey Protein whose majority constituent is β-Lactoglobulin, gives abundant source of branched chain amino acids especially Leucine which plays a key role in initiating transcription of protein synthesis that speed recovery and adaptation to stress (exercise) and also a free thiol Cys which is (postulated) utilized in the body to generate antioxidant glutathione.[27]


Other β-Lactoglobulin related 3D structures and complexes

2q2m - Bovine β-Lactoglobulin Native (Fig. 4)

1b8e - Crystal structure of the Bovine β-Lactoglobulin (Isoforms A and B) in orthorombic space group

1qg5 - Crystal structure of the Bovine β-Lactoglobulin (Isoforms A)

1beb - Bovine β-Lactoglobulin, Lattice X

1cj5 - Bovine β-Lactoglobulin A

1gx8 - Bovine β-Lactoglobulin complexed with Retinol, Trigonal Lattice Z

1gx9 - Bovine β-Lactoglobulin complexed with Retinoic acid, Trigonal Lattice Z

1gxa - Bovine β-Lactoglobulin complexed with Retinol and Palmitic acid, Trigonal Lattice Z

1b0o - Bovine β-Lactoglobulin complexed with Palmitate, Lattice Z

1bsy 2blg 3blg - Structural Basis of the Tanford Transitioon of Bovine β-Lactoglobulin from crystal structures at 3 pH values

References

  1. ↑ http://www.jbc.org/content/104/2/359.citation
  2. ↑ http://www.sciencedirect.com/science/article/pii/S0958694698000211
  3. ↑ Wu SY, Perez MD, Puyol P, Sawyer L. beta-lactoglobulin binds palmitate within its central cavity. J Biol Chem. 1999 Jan 1;274(1):170-4. PMID:9867826
  4. ↑ Kontopidis G, Holt C, Sawyer L. Invited review: beta-lactoglobulin: binding properties, structure, and function. J Dairy Sci. 2004 Apr;87(4):785-96. PMID:15259212 doi:http://dx.doi.org/10.3168/jds.S0022-0302(04)73222-1
  5. ↑ Flower DR, North AC, Sansom CE. The lipocalin protein family: structural and sequence overview. Biochim Biophys Acta. 2000 Oct 18;1482(1-2):9-24. PMID:11058743
  6. ↑ http://www.biochemj.org/bj/318/bj3180001.htm
  7. ↑ Newcomer ME, Jones TA, Aqvist J, Sundelin J, Eriksson U, Rask L, Peterson PA. The three-dimensional structure of retinol-binding protein. EMBO J. 1984 Jul;3(7):1451-4. PMID:6540172
  8. ↑ Liu HC, Chen WL, Mao SJ. Antioxidant nature of bovine milk beta-lactoglobulin. J Dairy Sci. 2007 Feb;90(2):547-55. PMID:17235131 doi:http://dx.doi.org/10.3168/jds.S0022-0302(07)71538-2
  9. ↑ Wu SY, Perez MD, Puyol P, Sawyer L. beta-lactoglobulin binds palmitate within its central cavity. J Biol Chem. 1999 Jan 1;274(1):170-4. PMID:9867826
  10. ↑ Sakurai K, Konuma T, Yagi M, Goto Y. Structural dynamics and folding of beta-lactoglobulin probed by heteronuclear NMR. Biochim Biophys Acta. 2009 Jun;1790(6):527-37. doi: 10.1016/j.bbagen.2009.04.003., Epub 2009 Apr 10. PMID:19362581 doi:http://dx.doi.org/10.1016/j.bbagen.2009.04.003
  11. ↑ Taulier N, Chalikian TV. Characterization of pH-induced transitions of beta-lactoglobulin: ultrasonic, densimetric, and spectroscopic studies. J Mol Biol. 2001 Dec 7;314(4):873-89. PMID:11734004 doi:http://dx.doi.org/10.1006/jmbi.2001.5188
  12. ↑ Vijayalakshmi L, Krishna R, Sankaranarayanan R, Vijayan M. An asymmetric dimer of beta-lactoglobulin in a low humidity crystal form-Structural changes that accompany partial dehydration and protein action. Proteins. 2007 Oct 11;71(1):241-249. PMID:17932936 doi:10.1002/prot.21695
  13. ↑ Sakurai K, Konuma T, Yagi M, Goto Y. Structural dynamics and folding of beta-lactoglobulin probed by heteronuclear NMR. Biochim Biophys Acta. 2009 Jun;1790(6):527-37. doi: 10.1016/j.bbagen.2009.04.003., Epub 2009 Apr 10. PMID:19362581 doi:http://dx.doi.org/10.1016/j.bbagen.2009.04.003
  14. ↑ Brownlow S, Morais Cabral JH, Cooper R, Flower DR, Yewdall SJ, Polikarpov I, North AC, Sawyer L. Bovine beta-lactoglobulin at 1.8 A resolution--still an enigmatic lipocalin. Structure. 1997 Apr 15;5(4):481-95. PMID:9115437
  15. ↑ Wu SY, Perez MD, Puyol P, Sawyer L. beta-lactoglobulin binds palmitate within its central cavity. J Biol Chem. 1999 Jan 1;274(1):170-4. PMID:9867826
  16. ↑ Brownlow S, Morais Cabral JH, Cooper R, Flower DR, Yewdall SJ, Polikarpov I, North AC, Sawyer L. Bovine beta-lactoglobulin at 1.8 A resolution--still an enigmatic lipocalin. Structure. 1997 Apr 15;5(4):481-95. PMID:9115437
  17. ↑ Dominguez-Ramirez L, Del Moral-Ramirez E, Cortes-Hernandez P, Garcia-Garibay M, Jimenez-Guzman J. beta-Lactoglobulin's Conformational Requirements for Ligand Binding at the Calyx and the Dimer Interphase: a Flexible Docking Study. PLoS One. 2013 Nov 8;8(11):e79530. doi: 10.1371/journal.pone.0079530. PMID:24255705 doi:http://dx.doi.org/10.1371/journal.pone.0079530
  18. ↑ Dominguez-Ramirez L, Del Moral-Ramirez E, Cortes-Hernandez P, Garcia-Garibay M, Jimenez-Guzman J. beta-Lactoglobulin's Conformational Requirements for Ligand Binding at the Calyx and the Dimer Interphase: a Flexible Docking Study. PLoS One. 2013 Nov 8;8(11):e79530. doi: 10.1371/journal.pone.0079530. PMID:24255705 doi:http://dx.doi.org/10.1371/journal.pone.0079530
  19. ↑ Kontopidis G, Holt C, Sawyer L. Invited review: beta-lactoglobulin: binding properties, structure, and function. J Dairy Sci. 2004 Apr;87(4):785-96. PMID:15259212 doi:http://dx.doi.org/10.3168/jds.S0022-0302(04)73222-1
  20. ↑ Sakurai K, Goto Y. Dynamics and mechanism of the Tanford transition of bovine beta-lactoglobulin studied using heteronuclear NMR spectroscopy. J Mol Biol. 2006 Feb 17;356(2):483-96. Epub 2005 Dec 1. PMID:16368109 doi:http://dx.doi.org/10.1016/j.jmb.2005.11.038
  21. ↑ Taulier N, Chalikian TV. Characterization of pH-induced transitions of beta-lactoglobulin: ultrasonic, densimetric, and spectroscopic studies. J Mol Biol. 2001 Dec 7;314(4):873-89. PMID:11734004 doi:http://dx.doi.org/10.1006/jmbi.2001.5188
  22. ↑ Qin BY, Bewley MC, Creamer LK, Baker HM, Baker EN, Jameson GB. Structural basis of the Tanford transition of bovine beta-lactoglobulin. Biochemistry. 1998 Oct 6;37(40):14014-23. PMID:9760236 doi:10.1021/bi981016t
  23. ↑ Oliveira KM, Valente-Mesquita VL, Botelho MM, Sawyer L, Ferreira ST, Polikarpov I. Crystal structures of bovine beta-lactoglobulin in the orthorhombic space group C222(1). Structural differences between genetic variants A and B and features of the Tanford transition. Eur J Biochem. 2001 Jan;268(2):477-83. PMID:11168385
  24. ↑ http://www.sciencedirect.com/science/article/pii/S0958694698000211
  25. ↑ http://www.faqs.org/patents/app/20110038942
  26. ↑ Liu HC, Chen WL, Mao SJ. Antioxidant nature of bovine milk beta-lactoglobulin. J Dairy Sci. 2007 Feb;90(2):547-55. PMID:17235131 doi:http://dx.doi.org/10.3168/jds.S0022-0302(07)71538-2
  27. ↑ http://www.kettlercise.com/members-area/supplements/whey-protein.html

Proteopedia Page Contributors and Editors

Rini Triani

Retrieved from "http://52.214.119.220/wiki/index.php/Sandbox_Reserved_779"
Personal tools