Ribosomal protein S5

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===S5 in small ribosomal subunit===
 
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[[2zm6]], [[1n36]], [[1j5e]], [[3oge]], [[3ogy]], [[3ohc]], [[3ohd]], [[3ohy]], [[3oi0]], [[3oi2]], [[3oi4]], [[3oto]] - TtRPS5 in 30S ribosomal subunit+THX+16S RRNA – ''Thermus thermophilus''<br />
 
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[[2vqe]], [[2vqf]], [[2uuc]], [[2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[3pyn]], [[3pyq]], [[3pys]], [[3pyu]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+RNA fragment<br />
 
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[[3kc4]] – EcRPS5 in 30S ribosomal subunit - ''Escherichia coli''<br />
 
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[[3i1m]], [[3i1o]], [[3df1]], [[3df3]], [[2vho]], [[2vhp]], [[2avy]], [[2aw7]], [[1pnx]], [[3oaq]], [[3oar]], [[3ofa]], [[3ofb]], [[3ofo]], [[3ofp]], [[3ofx]], [[3ofy]], [[3or9]], [[3ora]] - EcRPS5 in 30S ribosomal subunit+16S RRNA<br />
 
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[[1i94]], [[1fka]], [[3uxs]], [[3uxt]], [[4dr1]] - TtRPS5 in 30S ribosomal subunit+16S RRNA<br />
 
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[[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - TtRPS5 in 30S ribosomal subunit+16S RRNA (mutant)<br />[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] – TtRPS5 in 30S ribosomal subunit+16S RRNA + mRNA<br />
 
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[[1p87]], [[1p6g]] - EcRPS5 in 30S ribosomal subunit+16S RRNA – Cryo-EM<br />
 
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[[3bbn]] - RPS5 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach
 
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===S5 in small + large ribosomal subunit===
 
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[[1ml5]] - EcRPS5 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM<br />
 
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[[3j0l]], [[3j0o]] - RPS5 in 40S ribosomal subunit+60S ribosomal subunit +tRNA +mRNA fragment+ RRNA fragments – rabbit - Cryo-EM
 
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===S5 in small ribosomal subunit+ chain release factor (RF)===
 
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[[3mr8]], [[3ms0]] – TtRPS5 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA <br />
 
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[[3d5a]], [[3d5c]] - TtRPS5 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
 
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[[3zvo]] – TtRPS4 in 30S ribosomal subunit+THX+P-site tRNA Met +mRNA +16S RRNA+chain release factor 3<br />
 
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[[2b64]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1<br />
 
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[[2b9m]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2<br />
 
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[[2x9r]], [[2x9t]], [[2wh1]], [[2wh3]] - TtRPS5 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA<br />
 
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[[3f1e]], [[3f1g]] - TtRPS5 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA<br />
 
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[[3uoq]] - EcRPS5 + 16S RRNA + mRNA + peptide chain release factor<br />
 
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[[4kfh]], [[4kfk]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+ RF-2 + mRNA+ P-site tRNA fMet<br />
 
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===S5 in small ribosomal subunit+tRNA+mRNA===
 
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[[2hgi]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet<br />
 
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[[4l6k]], [[4l6m]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA<br />
 
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[[2hgp]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br />
 
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[[3t1h]], [[3t1y]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA<br />
 
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[[3tvf]], [[3tvg]], [[3uyd]], [[3uyf]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA<br />
 
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[[3zn7]], [[3znd]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+A-site tRNA Ile agmatidine + E-site tRNA Ile agmatidine + mRNA<br />
 
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[[3uz6]], [[3uz7]], [[3uzg]], [[3uzi]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA<br />
 
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[[2i2p]], [[2i2u]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br />
 
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[[2hgr]], [[3v6u]], [[3v6v]], [[4ej9]], [[4eja]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br />
 
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[[1yl4]] – TtRPS5 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator<br />
 
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[[1pns]] - EcRPS5 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA <br />
 
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[[3j0u]], [[3j0v]], [[3j0x]], [[3j0z]], [[3j10]], [[3j20]] – EcRPS5 in 30S ribosomal subunit+ A-site tRNA + P-site tRNA +16S RRNA+mRNA – Cryo-EM<br />
 
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[[3j13]] – EcRPS5 in 30S ribosomal subunit+ P-site tRNA +16S RRNA+mRNA – Cryo-EM<br />
 
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[[1xnq]], [[1xnr]] - TtRPS5 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA<br />
 
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[[4gkj]], [[4gkk]] - TtRPS5 in 30S ribosomal subunit +16S RRNA +THX + mRNA + tRNA Met<br />
 
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[[4jv5]], [[4jya]], [[4k0k]], [[4k0l]] - TtRPS5 in 30S ribosomal subunit +16S RRNA +THX + mRNA + ASL-tRNA <br />
 
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===S5 in small ribosomal subunit+A-site tRNA===
 
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[[2uxd]], [[2uxc]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA<br />
 
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[[1n32]], [[1n33]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA<br />
 
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[[1n34]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA<br />
 
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[[1xmo]], [[1xmq]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA<br />
 
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[[2uxb]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA
 
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===S5 in small ribosomal subunit+P-site tRNA===
 
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[[3i8g]] - TtRPS5 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA<br />
 
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[[3i8h]], [[3i9b]], [[3i9d]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA<br />
 
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[[1ibk]] - TtRPS5 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br />
 
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[[2wwl]] - EcRPS5 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA <br />
 
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[[3i1q]] - EcRPS5 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA<br />
 
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[[3i1s]], [[3i1z]], [[3i21]] - EcRPS5 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA
 
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===S5 in small ribosomal subunit+A-site tRNA+P-site tRNA===
 
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[[1ibl]], [[1ibm]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA
 
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===S5 in small ribosomal subunit+P-site tRNA+E-site tRNA===
 
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[[2ow8]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA<br />
 
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[[2b9o]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA<br />
 
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[[2qnh]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
 
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[[2wdg]], [[2wdh]], [[2wdk]], [[2wdm]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe
 
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===S5 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA===
 
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[[2gy9]], [[2gyb]] - EcRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM<br />
 
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[[1jgo]], [[1jgp]], [[1jgq]], [[1gix]] - TtRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br />
 
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[[4k0p]] - TtRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA +mRNA +16S RRNA<br />
 
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[[3e1a]], [[3e1c]] - EcRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA
 
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===S5 in small ribosomal subunit + antibiotics===
 
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[[1i95]], [[1i97]], [[2hhh]], [[2f4v]] , [[3knn]], [[4dr3]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+antibiotic<br />
 
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[[1hnw]], [[1hnx]], [[1hnz]], [[1fjg]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic<br />
 
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[[2qbb]], [[2qb9]], [[1vs5]], [[1vs7]], [[2qan]], [[2qal]], [[2qou]], [[2qow]], [[2qoy]], [[2qp0]], [[2z4k]], [[2z4m]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+antibiotic<br />
 
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[[3sfs]] – EcRPS5 in 30S ribosomal subunit+16S RRNA+ mRNA + RF-3 + antibiotic<br />
 
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[[4gaq]], [[4gas]] – EcRPS5 in 30S ribosomal subunit+16S RRNA+ mRNA + antibiotic<br />
 
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[[2j00]], [[2j02]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA<br />
 
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[[3knl]], [[3knm]], [[3knj]], [[3knh]] - TtRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+ antibiotics<br />
 
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[[3uz3]], [[3uz4]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA + paromomycin<br />
 
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[[4g5k]], [[4g5m]], [[4g5t]], [[4g5v]] - TtRPS5 in 30S ribosomal subunit+16S RRNA + tRNA fMet + mRNA + antibiotics<br />
 
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[[3uzl]], [[3uzm]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA + paromomycin
 
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===S5 in small ribosomal subunit + ribosome recycling factor===
 
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[[2qbd]], [[2qbf]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor<br />
 
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[[3r8n]], [[3r8o]], [[4gd1]], [[4gd2]] – EcRPS5 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA<br />
 
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[[2qbh]], [[2qbj]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin<br />
 
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[[2v46]], [[2v48]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet
 
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===S5 in small ribosomal subunit + elongation factor===
 
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[[2wri]], [[2wrk]], [[2xsy]], [[2xuy]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G<br />
 
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[[2wrn]], [[2wrq]] - TtRPS5 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4<br />
 
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[[2xqd]] - TtRPS5 in 30S ribosomal subunit+THX+E-site tRNA+mRNA +16S RRNA+elongation factor TU-B<br />
 
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[[3fic]] - TtRPS5 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A<br />
 
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[[4abr]] - TtRPS5 in 30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU<br />
 
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[[3izv]] – EcRPS5 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU<br />
 
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[[3j18]] - EcRPS5 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+ mRNA + SSRA-binding protein + formyl-Met specific initiator tRNA + elongation factor G – Cryo-EM<br />
 
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[[3izw]] – EcRPS5 in 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU<br />
 
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[[2y0u]], [[2y0w]], [[2y0y]], [[2y10]], [[2y12]], [[2y14]], [[2y16]], [[2y18]] - TtRPS5 in 30S subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU<br />
 
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[[3fih]] - EcRPS5 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU<br />
 
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[[3huw]], [[3huy]] - TtRPS5 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P<br />
 
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[[1s1h]] - yRPS5 in 40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast<br />
 
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[[4b8f]], [[4b8h]] - TtRPS5 in 30S ribosomal subunit+THX+RNA+mRNA +16S RRNA+elongation factor G<br />
 
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[[4btc]], [[4kdg]], [[4kdj]] - TtRPS5 in 30S ribosomal subunit+THX+RNA +16S RRNA+elongation factor G<br />
 
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[[4juw]] - TtRPS5 in 30S ribosomal subunit+THX+ tRNA Phe +16S RRNA + mRNA +elongation factor G<br />
 
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[[4kbt]], [[4kbv]], [[4kcy]], [[4kd0]], [[4kd8]], [[4kda]] - TtRPS5 in 30S ribosomal subunit+THX+ tRNA Met +16S RRNA + mRNA + viomycin + elongation factor G<br />
 
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[[4kiy]], [[4kj0]], [[4kj2]], [[4kj4]], [[4kj6]], [[4kj8]], [[4kja]], [[4kjc]] - EcRPS5 in 30S ribosomal subunit +16S RRNA + viomycin + elongation factor G<br />
 
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===S5 in small ribosomal subunit + translation initiation factor===
 
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[[1i96]] - TtRPS5 in 30S ribosomal subunit+THX+IF3+16S RRNA<br />
 
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[[1hr0]] - TtRPS5 in 30S ribosomal subunit+THX+IF+16S RRNA
 
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===S5 in small ribosomal subunit + various proteins===
 
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[[3jyv]] – RPS5 in 40S ribosomal subunit+RACK1+S19E+P-site tRNA – ''Thermomyces lanuginosus''<br />
 
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[[2xzm]], [[2xzn]] - RPS5 in 40S subunit+RACK1 - ''Tetrahymena thermophila''<br />
 
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[[2zkq]] - RPS5 in 40S ribosomal subunit+RACK1+RNA – dog – Cryo EM<br />
 
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[[3iz6]] - RPS5 in 40S ribosomal subunit+RACK1 – wheat – Cryo EM <br />
 
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[[3kiq]], [[3kis]], [[3kiu]], [[3kix]] - TtRPS5 in 30S ribosomal subunit+toxin RelE+16S RRNA<br />
 
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[[2xfz]], [[2xg1]] - TtRPS5 in 30S ribosomal subunit+colicin E3+E-site tRNA+mRNA+16S RRNA<br />
 
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[[4dh9]], [[4dhb]] - TtRPS5 in 30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ<br />
 
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[[3v22]], [[3v24]], [[3v26]], [[3v28]] - TtRPS5 in 30S ribosomal subunit +16S RRNA +THX + modulation factor<br />
 
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[[3v2c]], [[3v2e]] - TtRPS5 in 30S ribosomal subunit +16S RRNA +THX + ribosome-associated inhibitor<br />
 
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[[1voq]], [[1vos]], [[1vov]], [[1vox]], [[1voz]] - EcRPS5 in 30S ribosomal subunit+protein Y+16S RRNA<br />
 
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[[3j36]] - EcRPS5 in 30S ribosomal subunit+ tetracycline resistance protein +16S RRNA + mRNA + P-tRNA – Cryo-EM<br />
 
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[[2noq]] – yRPS5+yRPL1+18S RRNA+25S RRNA+CRPV IRES<br />
 
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[[3o2z]], [[3o30]] - yRPS5 in 40S ribosomal subunit+18S RRNA+RACK1<br />
 
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[[3izb]] - yRPS5 in 40S ribosomal subunit+ RACK1 – Cryo-EM<br />
 
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[[3u5c]], [[3u5g]] - yRPS5 in 40S ribosomal subunit+ RACK1 + suppressor protein SMT1<br />
 
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[[3iy8]] – EcRPS5+S6+S8+S9+S11+S12+S15+S16+S17+S18+''Leishmania taretolae'' small subunit<br />
 
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[[3j00]] – EcRPS5 + 16S RRNA + FTSQ + apolipoprotein A-I<br />
 
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[[2ykr]] – EcRPS5 + 16S RRNA + GMPPNP + GTPase RSGA<br />
 
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[[4a2i]] – EcRPS5 + 16S RRNA + GTPase RSGA – Cryo EM<br />
 
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[[4adv]] - EcRPS5 + 16S RRNA + methyltransferase – Cryo EM
 
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===S5 in small 40S ribosomal subunit===
 
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[[3j3a]] - RPS5 in 40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – human – Cryo-EM<br />
 
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[[4kzx]] - rRPS5 in 40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br />
 
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[[4kzy]] - rRPS5 in 40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br />
 
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[[4kzz]] - rRPS5 in 40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br />
 
===S5 in part of small ribosomal subunit===
===S5 in part of small ribosomal subunit===
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[[1qd7]] – TtRPS5+TtRPS4+TtRPS6+TtRPS7+TtRPS8+TtRPS15+TtRPS17+TtRPS20+16S RRNA fragment<br />
+
[[1qd7]] – TtRPS5+TtRPS4+TtRPS6+TtRPS7+TtRPS8+TtRPS15+TtRPS17+TtRPS20+16S RRNA fragment - ''Thermus thermophilus''<br />
[[1pkp]] – GsRPS5 – ''Geobacillus stearothermophilus''<br />
[[1pkp]] – GsRPS5 – ''Geobacillus stearothermophilus''<br />
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[[1dv4]] – GsRPS5+TtRPS7+16S RRNA
+
[[1dv4]] – GsRPS5+TtRPS7+16S RRNA<br />
 +
[[2noq]] – yRPS5+yRPL1+18S RRNA+25S RRNA+CRPV IRES – yeast<br />
[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 08:41, 27 April 2014

Image:RPS5.png
Crystal Structure of Ribosomal protein S5 from 2zm6, chain E

Template:STRUCTURE 2zm6













Ribosomal protein S5 (RPS5) is one of the 22 proteins which belong to the of the bacterial ribosome. The images at the left and at the right correspond to one representative RPS5, i.e. the crystal structure of Ribosomal protein S5 from Thermus thermophilus (2zm6, chain E).

Contents




3D Structures of Ribosomal protein S5

Updated on 27-April-2014


S5 in part of small ribosomal subunit

1qd7 – TtRPS5+TtRPS4+TtRPS6+TtRPS7+TtRPS8+TtRPS15+TtRPS17+TtRPS20+16S RRNA fragment - Thermus thermophilus
1pkp – GsRPS5 – Geobacillus stearothermophilus
1dv4 – GsRPS5+TtRPS7+16S RRNA
2noq – yRPS5+yRPL1+18S RRNA+25S RRNA+CRPV IRES – yeast

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky

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