User:Eric Martz/Sandbox 3
From Proteopedia
(→User Interface - ed) |
(→ConSurf Prototype - ed) |
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===Scenes=== | ===Scenes=== | ||
| - | Opening the proposed <i>Evolutionary Conservation</i> section below the molecule would automatically color all chains by ConSurf, and spacefill them. Checkboxes in this section, one per chain, would be checked when the section is first opened. Unchecking a given chain would render it as a gray backbone. | + | Opening the proposed <i>Evolutionary Conservation</i> section below the molecule would automatically color all chains by ConSurf, and spacefill them. Checkboxes in this section, one per chain, would be checked when the section is first opened. Unchecking a given chain would render it as a gray backbone (as in ConSurf). Ligands will be ball and stick, with dot surfaces, colored by element (as in ConSurf). |
*<scene name='User:Eric_Martz/Sandbox_3/Consurf/1'>ConSurf color all 4 chains</scene> (2 alphas, A and C, and 2 betas, B and D, in 2HHD). | *<scene name='User:Eric_Martz/Sandbox_3/Consurf/1'>ConSurf color all 4 chains</scene> (2 alphas, A and C, and 2 betas, B and D, in 2HHD). | ||
| - | *ConSurf color only chains A and B (one alpha, one beta) | + | *<scene name='User:Eric_Martz/Sandbox_3/Consurf/2'>ConSurf color only chains A and B</scene>ConSurf color only chains A and B (one alpha, one beta) |
*ConSurf color only chains A and C (both alphas) | *ConSurf color only chains A and C (both alphas) | ||
*ConSurf color only chain A | *ConSurf color only chain A | ||
Revision as of 00:28, 29 June 2008
Contents |
ConSurf Prototype
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| 2hhd, resolution 2.20Å () | |||||||||
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| Ligands: | , | ||||||||
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| Resources: | FirstGlance, OCA, RCSB, PDBsum | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||
Scenes
Opening the proposed Evolutionary Conservation section below the molecule would automatically color all chains by ConSurf, and spacefill them. Checkboxes in this section, one per chain, would be checked when the section is first opened. Unchecking a given chain would render it as a gray backbone (as in ConSurf). Ligands will be ball and stick, with dot surfaces, colored by element (as in ConSurf).
- (2 alphas, A and C, and 2 betas, B and D, in 2HHD).
- ConSurf color only chains A and B (one alpha, one beta)
- ConSurf color only chains A and C (both alphas)
- ConSurf color only chain A
User Interface & Color Key
Below are non-interactive mockups just to suggest the look for a user interface.
- Links do not work.
- The color key image should be centered (I could not get it centered in the mockup).
- [✓] represents a checkbox. When checked, it will color the chain by conservation, and spacefill it. When unchecked, that chain will become a gray backbone trace.
- The link to Explanation would go to a Proteopedia page of explanation. It might be a revised version of Conservation, Evolutionary.
Before expanding this section, it could look like this:
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Evolutionary Conservation: [show] |
After expanding, it could look like this:
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Evolutionary Conservation: [hide] | ||
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| Show Conservation for Chain(s): | Rows = identical sequences: [✓]A [✓]B | |
| Further Information: |
Explanation
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