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Introduction

This scene is of the within the Kappa Opioid Receptor by Group 3.

-"Kappa-Opioid receptors mediate the regulation of pain, respiratory drive, mood"
-"structure reveals important features of the ligand-binding pocket that contribute to the high affinity and subtype selectivity of JDTic for the human kappa-OR"
-consequences of stress as well as depression/anxiety
-hallucinogenic effects
-talk about mu and kappa OR
-intro to kappa-OR subtype selectivity

Overall Structure

-describe the overall size of the molecule: how massive it is, how many alpha helices and beta sheets it contains.

-describe the two different dimmers that form the protien and how and along which alpha helices the dimmers coordinate with each other

-describe how the protein fits in the cell membrane, how much is contained in the membrane.

-describe which parts are conserved and which parts make it a unique molecule like how the sulfide bond near the n-terminus among other feature distinguishes itself from CXCR4

-describe the structure and shape of the binding pocket, discuss how these structural conformations make it unique.

Binding Interactions

Active Site of kappa Opioid Receptors

Common Ligands of Opioid Receptors

 Agonists - Mechanisms, Structure, and Effects
    Salvinorin A
    Morphine

 Antagonists - Mechanisms, Structure, and Effects
    JDTic
    Naloxone

Additional Features

The k-opioid receptor is a protein, with inter-membrane alpha helices displayed in red.

Image:TransmembraneMotif.png

-Show Hydropathy plot displaying opioid receptor as an amphipathic alpha helix

Based on the Ramachandran plot for the general case showing the standard phi and psi angle, it can be inferred that the majority of the secondary structure is composed , with the alpha helices shown in purple and the beta sheets shown in yellow.

The large cluster of dots shown close to the origin of the plot corresponds to small angles that imply an alpha helix.

Quiz Question 1

-include some basic structure of , maybe show charge distribution
- Where are the binding sites of the opioid receptor (OR why are the binding sites located here in jmol), and what conformational changes does the protein undergo while binding to ligands? What kinds of functional groups would opioids have that interact with these sites, enabling binding?

Quiz Question 2

What properties would a substrate binding to the active site of the Kappa-opioid receptor probably possess? Explain your reasoning.

See Also

• UvrABC
• Opioid Receptor
• Mu Opioid Receptor Bound to a Morphinan Antagonist
• G protein-coupled Receptor

Credits

Introduction - Patrick Harney

Overall Structure - Matthew Long

Drug Binding Site - Brandon Kittredge

Additional Features - Jacob Kellet

Quiz Question 1 - Leah Caffrey

Quiz Question 2 - Bridget Kilkenny

References