User:Rana Saad/The human GABAb receptor

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Mammalian GABA<sub>B</sub> receptor is a class C [http://proteopedia.org/wiki/index.php/G_protein-coupled_receptor#3D_Structures_of_G_protein-coupled_receptors G-protein coupled receptor]<ref>PMID:23237917</ref>. Its structure is similar to [[Metabotropic glutamate receptor|metabotropic glutamate receptors]] (mGluR) ligand binding domain. GABA<sub>B</sub> receptor is central to inhibitory neurotransmission in the brain and so is considered a good candidate for treatments against alcoholism, stress and number of brain diseases<ref>PMID:19913201</ref>.
Mammalian GABA<sub>B</sub> receptor is a class C [http://proteopedia.org/wiki/index.php/G_protein-coupled_receptor#3D_Structures_of_G_protein-coupled_receptors G-protein coupled receptor]<ref>PMID:23237917</ref>. Its structure is similar to [[Metabotropic glutamate receptor|metabotropic glutamate receptors]] (mGluR) ligand binding domain. GABA<sub>B</sub> receptor is central to inhibitory neurotransmission in the brain and so is considered a good candidate for treatments against alcoholism, stress and number of brain diseases<ref>PMID:19913201</ref>.
[[Image:GABAb.receptor.cartoon2.png|thumb|200px]]
[[Image:GABAb.receptor.cartoon2.png|thumb|200px]]
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=='''''Structure'''''==
=='''''Structure'''''==
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GABA<sub>B</sub> receptor functions as an obligatory heterodimer subunit of GABA<sub>B1</sub> (GBR1) and GABA<sub>B2</sub> (GBR2). GBR1 is responsible for ligand-binding. GBR2, on the other hand, is responsible for G protein coupling subunits. The GABA<sub>B</sub> receptor is one of only a few obligate receptor heterodimers currently known. There is no crystal or NMR structure of the complete protein, but the extracellular and intracellular domains of it .
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GABA<sub>B</sub> receptor functions as an obligatory heterodimer subunit of GABA<sub>B1</sub> (GBR1) and GABA<sub>B2</sub> (GBR2). GBR1 is responsible for ligand-binding. GBR2, on the other hand, is responsible for G protein coupling subunits. The GABA<sub>B</sub> receptor is one of only a few obligate receptor heterodimer currently known. There is no crystal or NMR structure of the complete receptor, but the extracellular and intracellular domains of it .
===GBR1 and GBR2 subunits structure===
===GBR1 and GBR2 subunits structure===
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Each subunit is a domain of seven-transmembrane helixes, composed of a large extracellular domain - venus flytrap (VFT), its called like that becouse its like the [http://en.wikipedia.org/wiki/Venus_flytrap venus flytrap] while binding agonists and antagonists.
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Each subunit is a domain of seven-transmembrane helixes, composed of a large extracellular domain - venus flytrap (VFT), it is called like this because it is like the [http://en.wikipedia.org/wiki/Venus_flytrap venus flytrap] while binding agonist and antagonist.
VFT contains two lobe-shaped domains: LB1 and LB2, which are connected by three short loops.
VFT contains two lobe-shaped domains: LB1 and LB2, which are connected by three short loops.
LB1 and LB2 are <scene name='70/701448/Gbr2_subunit/1'>αβ-folds composed of central β sheet flanked by an α helix</scene><ref>PMID:24305054</ref>.
LB1 and LB2 are <scene name='70/701448/Gbr2_subunit/1'>αβ-folds composed of central β sheet flanked by an α helix</scene><ref>PMID:24305054</ref>.
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All of the [http://en.wikipedia.org/wiki/Agonist agonists] and [http://en.wikipedia.org/wiki/Receptor_antagonist antagonists] bind the extracellular VFT module situated at the crevice between the LB1 and LB2 domains of the GBR1 subunit.
All of the [http://en.wikipedia.org/wiki/Agonist agonists] and [http://en.wikipedia.org/wiki/Receptor_antagonist antagonists] bind the extracellular VFT module situated at the crevice between the LB1 and LB2 domains of the GBR1 subunit.
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===Agonist-induced heterodimer interface===
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Both lobes LB1 and LB2 resdues of GBR1 interact with the GABA<sub>B</sub> agonsits such as: [http://en.wikipedia.org/wiki/Gamma-Aminobutyric_acid GABA],[http://en.wikipedia.org/wiki/Baclofen baclofen]. as a results of this interacting '''closed conformation''' will be stabilized when <scene name='70/701448/Gaba_ligand/4'> GBR1 subunit bound to GABA</scene> or <scene name='70/701448/Baclofen/3'>bound to baclofen</scene> and other agonists.
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Both lobes LB1 and LB2 resdues of GBR1 interact with the GABA<sub>B</sub> agonsits such as: [http://en.wikipedia.org/wiki/Gamma-Aminobutyric_acid GABA],[http://en.wikipedia.org/wiki/Baclofen baclofen]. as a results of this interacting '''closed conformation''' will be stabilized when <scene name='70/701448/Gaba_ligand/4'> GBR1 binds GABA</scene> or <scene name='70/701448/Baclofen/3'>binds baclofen</scene> and other agonists.
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===Antgonist-induced heterodimer interface===
 
GABA<sub>B</sub> Antgonists such as: [http://en.wikipedia.org/wiki/Saclofen saclofen], [http://www.hellobio.com/cgp-46381.html CGP46381], [http://www.hellobio.com/phaclofen.html?picat=&q=phaclofen phaclofen], [http://www.hellobio.com/cgp-35348.html?picat=&q=CGP+35348 CGP35348] and [http://www.hellobio.com/cgp-54626-hydrochloride.html?picat=&q=CGP+54626 CGP54626], mostly intercat with LB1 resduses of GBR1. both ends of the antagonist bind the LB1, which produce '''open confirmation''' of GBR1.
GABA<sub>B</sub> Antgonists such as: [http://en.wikipedia.org/wiki/Saclofen saclofen], [http://www.hellobio.com/cgp-46381.html CGP46381], [http://www.hellobio.com/phaclofen.html?picat=&q=phaclofen phaclofen], [http://www.hellobio.com/cgp-35348.html?picat=&q=CGP+35348 CGP35348] and [http://www.hellobio.com/cgp-54626-hydrochloride.html?picat=&q=CGP+54626 CGP54626], mostly intercat with LB1 resduses of GBR1. both ends of the antagonist bind the LB1, which produce '''open confirmation''' of GBR1.
it is very easy to notice the '''open confirmation''' when :
it is very easy to notice the '''open confirmation''' when :
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<scene name='70/701448/Saclofen_ant/2'>GBR1 binds saclofen</scene>.
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<scene name='70/701448/Saclofen_ant/2'>GBR1 subunit bound to saclofen</scene>.
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<scene name='70/701448/Cgp46381_ant/2'>GBR1 binds CGP46381</scene>.
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<scene name='70/701448/Cgp46381_ant/2'>GBR1 subunit bound to CGP46381</scene>.
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<scene name='70/701448/Phaclofen_ant/1'>GBR1 binds phaclofen</scene>.
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<scene name='70/701448/Phaclofen_ant/1'>GBR1 subunit bound to phaclofen</scene>.
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<scene name='70/701448/Ant_cg835348/1'>GBR1 binds CGP35348</scene>.
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<scene name='70/701448/Ant_cg835348/1'>GBR1 subunit bound to CGP35348</scene>.
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<scene name='70/701448/Ant_CGP54626/1'>GBR1 binds CGP54626</scene>.
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<scene name='70/701448/Ant_CGP54626/1'>GBR1 subunit bound to CGP54626</scene>.
=='''''Dimerization motif'''''==
=='''''Dimerization motif'''''==

Revision as of 16:51, 8 July 2015

4mqe, resolution 3.20Å

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