User:Demétrio Speckhort/Sandbox 1
From Proteopedia
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== Structure == | == Structure == | ||
In the crystal structures of SPPV14 bound to BH3 peptide motifs, it is observed that SPPV14 is a monomeric structure. The possibility of it being a homodimer in a cellular context cannot be excluded, but the data show that its active form is monomeric. SPPV14 is a prosurvival protein that utilizes the canonical ligand-binding grove to engage BH3 motif peptides of proapoptotic Bcl-2 proteins[2]. <scene name='10/1050292/Chain_a/1'>The A chain of the SPPV14 protein</scene> binds to <scene name='10/1050292/Chain_b/1'>the B chain of the BH3 peptide</scene> through specific interactions, which are essential for the formation of the heterodimeric complex AB between SPPV14 and the BH3 peptide. | In the crystal structures of SPPV14 bound to BH3 peptide motifs, it is observed that SPPV14 is a monomeric structure. The possibility of it being a homodimer in a cellular context cannot be excluded, but the data show that its active form is monomeric. SPPV14 is a prosurvival protein that utilizes the canonical ligand-binding grove to engage BH3 motif peptides of proapoptotic Bcl-2 proteins[2]. <scene name='10/1050292/Chain_a/1'>The A chain of the SPPV14 protein</scene> binds to <scene name='10/1050292/Chain_b/1'>the B chain of the BH3 peptide</scene> through specific interactions, which are essential for the formation of the heterodimeric complex AB between SPPV14 and the BH3 peptide. | ||
| - | SPPV14 has a globular form, consisting of a central helix (Ⲁ-5) surrounded by six other helices, thus forming the classical structure and fold of Bcl-2. The canonical binding site of SPPV14 is formed by the Ⲁ2-Ⲁ5 helices. The action of the SPPV14 is by sequestering BH3-only proteins including Bim, Bid, Bmf, Hrk, and Puma as well as Bak and Bax; SPPV14 strongly binds with Hrk and Bax, and the interactions are primarily mediated by the 4 hydrophobic canonical sites present in SPPV14, as well as numerous ionic interactions and hydrogen bonds. Unlike other vBcl-2, SPPV14 forms ionic interactions using R84 with Hrk D42 or with Bax D68, reminiscent of a highly conserved ionic bond between Arg in the BH1 region, pro-survival motif of mammals, and the Bcl-2 protein that retains the Asp of the functional BH3 motif[2]. | + | SPPV14 has a globular form, consisting of a <scene name='10/1050292/Chain_a_-_alfa-5_helix/1'>central helix (Ⲁ-5)</scene> surrounded by six other helices, thus forming the classical structure and fold of Bcl-2. The canonical binding site of SPPV14 is formed by the Ⲁ2-Ⲁ5 helices. The action of the SPPV14 is by sequestering BH3-only proteins including Bim, Bid, Bmf, Hrk, and Puma as well as Bak and Bax; SPPV14 strongly binds with Hrk and Bax, and the interactions are primarily mediated by the 4 hydrophobic canonical sites present in SPPV14, as well as numerous ionic interactions and hydrogen bonds. Unlike other vBcl-2, SPPV14 forms ionic interactions using R84 with Hrk D42 or with Bax D68, reminiscent of a highly conserved ionic bond between Arg in the BH1 region, pro-survival motif of mammals, and the Bcl-2 protein that retains the Asp of the functional BH3 motif[2]. |
== Function == | == Function == | ||
Revision as of 01:00, 1 June 2024
SPPV14
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
