Sandbox Reserved 1226

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This Sandbox is Reserved from Jan 17 through June 31, 2017 for use in the course Biochemistry II taught by Jason Telford at the Maryville University, St. Louis, USA. This reservation includes Sandbox Reserved 1225 through Sandbox Reserved 1244.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Contents

Ubiquitin

</StructureSection> <Struc

Ubiquitin

Drag the structure with the mouse to rotate
ture load= size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />

This is a default text for your page '. Click above on edit this page' to modify. Be careful with the < and > signs. You may include any references to papers as in: the use of JSmol in Proteopedia [1] or to the article describing Jmol [2] to the rescue.

Description

Ubiquitin is a very small, very studied protein that is found in almost all cellular tissues in humans and other eukaryotic organisms. Ubiquitin consist of 76 amino acids.

Function

Ubiquitin It helps regulate the processes of other proteins in the body. When ubiquitin is added to a substrate protein, the process of this occurring is known as ubiquitination. This process can lead to many different outcomes. Ubiquitination has three main steps: activation, conjugation and ligation which are performed by ubiquitin-activating enzymes, ubiquitin conjugating enzymes and ubiquitin ligase respectively. The main function of ubiquitin is degradation of the protein via the proteasome.

Diseases

Some isoforms of Ubiquitin 1 have been found in diseases such as Alzheimers and Parkinson's Disease, which are both neurodegenerative disorders. ==

Processes Ubiquitin Affects

Ubiquitin can affect many different processes including apoptosis, DNA transcription and repair, processing of antigens, viral infections, stress response pathway, immune and inflammatory responses, and degeneration of neurons and muscular cells

This is a sample scene created with SAT to by Group, and another to make of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.


References

  1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
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