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Article title matches
- User:Jaime Prilusky/Test/superposition (2,917 bytes)
- Image:Superposition.png (69 bytes)
- Image:Superposition of open and closed.png (0 bytes)
- Structure superposition tools (28,712 bytes)
1: ...superposition. In the case of proteins, structure superposition is often performed without reference to the seque...
3: ...cture superposition. Characteristics of structure superposition servers and software packages are listed, along w...
5: There are two common applications of structure superposition servers:
6: ...y them from the [[PDB]]) and generate a structure superposition.
7: ...tures in the [[PDB]], based on pairwise structure superpositions between your query structure versus each structu... - Image:5nyp-AF-fatcat-superposition.png (0 bytes)
- Jmol/Superposition (11,764 bytes)
2: ...RMSD) to achieve a compromise. If you want to see superpositions in the context of a Proteopedia page (and look a...
20: If you know which residues you want to target for superposition because you have a multiple sequence alignment, y...
27: ...{1.1}" define which atoms will be affected by the superposition. Here, we choose all of the atoms in the two stru...
29: ...ly, the "ROTATE TRANSLATE" keywords do the actual superposition, i.e. change the coordinates of the first structu...
31: ...played in the console. If there is no output, the superposition failed (e.g. if less than 3 atoms are selected). - Image:UvrB superposition.JPG (0 bytes)
- Sandbox animation vs superposition (2,721 bytes)
3: ...efault text for your page '''Sandbox animation vs superposition'''. Click above on '''edit this page''' to modify...
11: <text>Superposition</text>
Page text matches
- 1cvl (4,567 bytes)
24: ...formation of Pseudomonas glumae lipase (PGL), but superposition of the two lipase structures reveals several conf... - User:Karsten Theis/Rigid body interpolation (4,709 bytes)
43: // Calculate lowest RMSD superposition of sel1 and sel2 as 4x4 matrix - 2jat (4,534 bytes)
24: ...oides subsp. mycoides small colony type (Mm-dAK). Superposition of Mm-dAK with its human counterpart's deoxyguano... - 2jaq (4,394 bytes)
24: ...oides subsp. mycoides small colony type (Mm-dAK). Superposition of Mm-dAK with its human counterpart's deoxyguano... - 2jas (4,447 bytes)
24: ...oides subsp. mycoides small colony type (Mm-dAK). Superposition of Mm-dAK with its human counterpart's deoxyguano... - 1vpi (4,753 bytes)
23: ...f folding: three long helices and a beta-hairpin. Superposition of the structure of the inhibitor shows an almost... - 2lip (4,981 bytes)
24: ... reveals a catalytic site exposed to the solvent. Superposition of PCL with the PGL and CVL structures indicates ... - 3lip (4,991 bytes)
24: ... reveals a catalytic site exposed to the solvent. Superposition of PCL with the PGL and CVL structures indicates ... - 2bgw (4,116 bytes)
24: ... archaeal XPF homodimer alone and bound to dsDNA. Superposition of these structures reveals a large domain moveme... - 2jfc (4,381 bytes)
24: ...esidues around the hydrophobic patch of domain 1. Superposition of the structure of azurin II with that of domain... - 1jia (5,336 bytes)
24: ...(F > 3sigma) with excellent stereochemistry. A superposition of the two molecules in the asymmetric unit gives... - 4i1y (4,403 bytes)
14: ...hree metrics of active site similarity, including superposition of continuous pharmacophoric property distributio... - 2ptk (6,737 bytes)
24: ...aC-helix access to the active conformation. These superpositions also suggest that the highly conserved alphaC-be... - 2lfb (5,042 bytes)
23: ..., and addition of these side-chains to the global superposition of residues 15 to 82 resulted in a r.m.s.d of 0.8... - 1hc9 (4,337 bytes)
24: ...ylcholine receptor, are remarkably similar. Their superposition indicates that the toxin wraps around the recepto... - 2iye (4,856 bytes)
24: ...7B (80 structurally aligned residues). Structural superposition with Ca-ATPase suggests a putative nucleotide-bin... - 2bvm (7,754 bytes)
24: ...st likely contribute to the target specificity. A superposition with other glycosyltransferases shows the expecte... - 2bvl (7,821 bytes)
24: ...st likely contribute to the target specificity. A superposition with other glycosyltransferases shows the expecte... - 2ucz (5,852 bytes)
23: ...her regions exhibit significant deviations in the superposition of the three structures and, like the two inserti... - Calculating GDT TS (7,061 bytes)
2: ...pirical model, taking into account many different superpositions of the two models. When the two structures diffe...
10: ===Run 1: Superposition===
11: ...n. The second run calculates GDT_TS based on that superposition.
31: ...rested in the '''RMSD''' and '''Seq_Id''' for the superposition deemed optimal by this server.
38: Run 2 uses the superposition determined in Run 1.
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