File list
From Proteopedia
 Date |
Name | User | Size | Description |
|---|---|---|---|---|
| 16:51, 10 March 2024 | Growthplate.png (file) | Gregg T. Holliday | 317 KB | (2O14 transformation plate growths. The transformation plate was made with LB medium, agar, and contained with 100 ๐๐/๐๐ฟ ampicillin. ) |
| 16:31, 10 March 2024 | Insilicosum2.png (file) | Gregg T. Holliday | 284 KB | (Image created in PyMOL molecular viewing software showing the structure of 2o14 with its five residues SER 171, ASP 339, HIS 342, GLY 209, and ASN 241 that belong to the proposed active site colored in yellow. ) |
| 16:27, 10 March 2024 | Insilicosum1.png (file) | Gregg T. Holliday | 67 KB | (Summary of most significant computational results for query 2O14 used to form hypothesis about 2O14's function.) |
| 16:11, 10 March 2024 | MCSA7.png (file) | Gregg T. Holliday | 71 KB | (Hydrolysis of the 2-acetyl-1-alkyl-sn-glycero-3-phosphocoholine substrate from the reaction catalyzed by 1bwp. The bond circled in green is the ester bond that is cleaved. Image was created using Microsoft Paint and ChemDraw.) |
| 16:06, 10 March 2024 | MCSA6.png (file) | Gregg T. Holliday | 55 KB | (Enzyme reaction catalyzed by 1j00, EC 3.1.1.5, lysophospholipase. The scheme was adapted from M-CSA and created in ChemDraw) |
| 16:06, 10 March 2024 | MCSA5.png (file) | Gregg T. Holliday | 76 KB | (Enzyme reaction catalyzed by 1pp4, EC 3.1.1.86, rhamnogalacturonan acetylesterase. The scheme was adapted from M-CSA and created in ChemDraw.) |
| 15:59, 10 March 2024 | MCSA4.png (file) | Gregg T. Holliday | 65 KB | (Enzyme reaction catalyzed by 1bwp, EC 3.1.1.47, 1-alkyl-2-acetylglycerophosphocholine esterase. The scheme was adapted from M-CSA and created in ChemDraw <ref name="Chemdraw"> Revvity Signals Software. ChemDraw | Revvity Signals Software. https://revvity) |
| 13:15, 10 March 2024 | MCSA3.png (file) | Gregg T. Holliday | 182 KB | (M-CSA mechanism description information for 1avf and 1bbs, EC 3.4.23, aspartic peptidase) |
| 13:14, 10 March 2024 | MCSA2.png (file) | Gregg T. Holliday | 178 KB | ( M-CSA mechanism description information for 1bwp, EC 3.1.1.47, 1-alkyl-2-acetylglycerophosphocholine esterase <ref name="MCSA"> . Ribeiro, A. J. M.; Holliday, G. L.; Furnham, N.; Tyzack, J. D.; Ferris, K.; Thornton, J. M. Mechanism and Catalytic Site Atl) |
| 13:13, 10 March 2024 | MCSA1.png (file) | Gregg T. Holliday | 92 KB | (Table 3. EC numbers of the six most significant SPRITE result enzymes with definitions from M-CSA) |
| 12:50, 10 March 2024 | SPRITE4.png (file) | Gregg T. Holliday | 217 KB | (SPRITE catalytic motif residue alignment image for a 1pp4 entry โ1pp4_c00โ and 2O14. 2O14โs residues are colored yellow. 1pp4โs residues are colored green. In the matches column 1pp4โs residues are listed first and 2O14โs residues are list) |
| 12:49, 10 March 2024 | SPRITE3.png (file) | Gregg T. Holliday | 224 KB | (SPRITE catalytic motif residue alignment image for a 1bwp entry โ1bwp_c00โ and 2O14. 2O14โs residues are colored yellow. 1bwpโs residues are colored green. In the matches column 1bwpโs residues are listed first and 2O14โs residues are list) |
| 12:27, 10 March 2024 | SPRITE2.png (file) | Gregg T. Holliday | 90 KB | ( 2O14 residues that align with the catalytic site residues of the six most significant enzyme results provided by SPRITE.) |
| 12:24, 10 March 2024 | MKburvar4.pdb (file) | Alexander Berchansky | 432 KB | |
| 12:24, 10 March 2024 | SPRITE1.png (file) | Gregg T. Holliday | 83 KB | (SPRITE results having scores indicating the most significant catalytic motif alignment with query 2O14.) |
| 11:55, 10 March 2024 | MKbur4c.pdb (file) | Alexander Berchansky | 175 KB | |
| 11:42, 10 March 2024 | DALI2.png (file) | Gregg T. Holliday | 701 KB | ( DALI results #20-50 for query 2O14 viewed during May 2023. The information of each result entry is listed from left to right as follows: โNo:โ, โChainโ, โZโ, โrmsdโ, โlaliโ, โnresโ, โ%idโ, โPDBโ, and โDescriptionโ ) |
| 11:39, 10 March 2024 | DALI1.png (file) | Gregg T. Holliday | 431 KB | (DALI results #1-19 for query 2O14 viewed during May 2023. The information of each result entry is listed from left to right as follows: โNo:โ, โChainโ, โZโ, โrmsdโ, โlaliโ, โnresโ, โ%idโ, โPDBโ, and โDescriptionโ <ref ) |
| 11:23, 10 March 2024 | Interproresults.png (file) | Gregg T. Holliday | 98 KB | (InterPro Results for Query Using 2O14โs FASTA Sequence as Seen in May 2023.) |
| 11:17, 10 March 2024 | Interproresults.PNG (file) | Gregg T. Holliday | 98 KB | (InterPro Results for Query Using 2O14โs FASTA Sequence Shown in May 2023. ) |
| 11:05, 10 March 2024 | BLASTpdomainentry.png (file) | Gregg T. Holliday | 46 KB | (BLAST graphic showing conserved domain and superfamily entries for query 2O14 that was viewed during May 2023.) |
| 10:59, 10 March 2024 | BLASTpdomainentry.PNG (file) | Gregg T. Holliday | 46 KB | (BLAST graphic showing conserved domain and superfamily entries for query 2O14 that was viewed during May 2023.) |
| 10:39, 10 March 2024 | Blastpparameters.png (file) | Gregg T. Holliday | 98 KB | ( Figure 2. BLAST Parameters of the Query 2O14 Conducted on May 28th, 2023 <ref> Sayers, E. W.; Bolton, E. E.; Brister, J. R.; Canese, K.; Chan, J.; Comeau, D. D.; Farrell, C. M.; Feldgarden, M.; Fine, A. M.; Funk, K.; et al. Database resources of the Nat) |
| 10:35, 10 March 2024 | Blastp_parameters.PNG (file) | Gregg T. Holliday | 98 KB | (Figure 2. BLAST Parameters of the Query 2O14 Conducted on May 28th, 2023 <ref> Sayers, E. W.; Bolton, E. E.; Brister, J. R.; Canese, K.; Chan, J.; Comeau, D. D.; Farrell, C. M.; Feldgarden, M.; Fine, A. M.; Funk, K.; et al. Database resources of the Nati) |
| 10:19, 10 March 2024 | Workflow1.PNG (file) | Gregg T. Holliday | 361 KB | (Flowchart showing the methodological approach used for functional characterization of 2O14. Order of methods is read from top to bottom and left to right.) |
| 09:54, 10 March 2024 | Mkbur4a.pdb (file) | Alexander Berchansky | 178 KB | |
| 09:52, 10 March 2024 | Mkvar4a1.pdb (file) | Alexander Berchansky | 178 KB | |
| 09:45, 10 March 2024 | Mkvar4aa.pdb (file) | Alexander Berchansky | 175 KB | |
| 12:59, 7 March 2024 | Mkvar4a.pdb (file) | Alexander Berchansky | 175 KB | |
| 10:31, 7 March 2024 | MKbur.pdb (file) | Alexander Berchansky | 176 KB | |
| 20:44, 6 March 2024 | ืฆืืืื_ืืกื_2024-03-06_224352.png (file) | Nurit Ben Shimol | 71 KB | |
| 20:29, 6 March 2024 | ืฆืืืื_ืืกื_2024-03-06_222131.png (file) | Nurit Ben Shimol | 52 KB | |
| 14:50, 6 March 2024 | MKvar.pdb (file) | Alexander Berchansky | 483 KB | |
| 15:20, 5 March 2024 | 4514923.mol (file) | Alexander Berchansky | 6 KB | |
| 10:46, 5 March 2024 | G_and_F_actin.jpg (file) | Gal Arditi | 122 KB | |
| 10:43, 5 March 2024 | Scheme-of-actin-filament-formation-First-G-actin-binds-to-ATP-Afterwards-it-forms.jpg (file) | Gal Arditi | 122 KB | (G_and_F_actin) |
| 09:27, 5 March 2024 | PHENOL_HYDROXYLASE_dimer.png (file) | Rivka Cohen | 921 KB | |
| 09:26, 5 March 2024 | PHENOL_HYDROXYLASE_stra.png (file) | Rivka Cohen | 818 KB | |
| 09:24, 5 March 2024 | PHENOL_HYDROXYLASE_act.png (file) | Rivka Cohen | 421 KB | |
| 07:55, 5 March 2024 | Bact.jpg (file) | Christina Ziv | 11 KB | |
| 07:47, 5 March 2024 | Phos.jpg (file) | Christina Ziv | 98 KB | |
| 16:14, 27 February 2024 | Pic5.png (file) | Enas Fatum-Dallashe | 23 KB | |
| 16:14, 27 February 2024 | Pic4.png (file) | Enas Fatum-Dallashe | 35 KB | |
| 16:14, 27 February 2024 | Pic3.png (file) | Enas Fatum-Dallashe | 37 KB | |
| 16:14, 27 February 2024 | Pic2.png (file) | Enas Fatum-Dallashe | 34 KB | |
| 22:39, 26 February 2024 | Pic1.png (file) | Enas Fatum-Dallashe | 23 KB | |
| 22:26, 26 February 2024 | ืชืืื ื5.png (file) | Enas Fatum-Dallashe | 23 KB | |
| 22:25, 26 February 2024 | ืชืืื ื1.png (file) | Enas Fatum-Dallashe | 23 KB | (Reverted to version as of 21:57, 26 February 2024) |
| 22:08, 26 February 2024 | ืชืืื ื2.png (file) | Enas Fatum-Dallashe | 34 KB | (Reverted to version as of 21:58, 26 February 2024) |
| 22:02, 26 February 2024 | ืชืืื ื4.png (file) | Enas Fatum-Dallashe | 35 KB |
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