Proteopedia:Table of Contents

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Revision as of 18:49, 6 November 2009 (edit) Joel L. Sussman (Talk | contribs) (→INTRODUCTION) ← Previous diff		Revision as of 18:51, 6 November 2009 (edit) (undo) Joel L. Sussman (Talk | contribs) (→METHODS OF STRUCTURE & SEQUENCE ANALYSIS) Next diff →
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	== METHODS OF STRUCTURE & SEQUENCE ANALYSIS ==		== METHODS OF STRUCTURE & SEQUENCE ANALYSIS ==
	* STRUCTURAL ANALYSIS & VISUALIZATION		* STRUCTURAL ANALYSIS & VISUALIZATION
-	**[[User:Wayne Decatur/Teaching Proteopedia]]	+	** [[Chime]]
-	**[[User:Wayne Decatur/Homology Modeling]]	+	** [[User:Wayne Decatur/Teaching Proteopedia]]
-	**[[User:Wayne Decatur/Generate Unfolded Structures]]	+	** [[User:Wayne Decatur/Homology Modeling]]
-	*SEQUENCE ANALYSIS	+	** [[User:Wayne Decatur/Generate Unfolded Structures]]
-	**[[User:Wayne Decatur/Sequence analysis tools]]	+	* SEQUENCE ANALYSIS
		+	** [[User:Wayne Decatur/Sequence analysis tools]]

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Revision as of 18:51, 6 November 2009

Contents 1 INTRODUCTION 2 BIOMOLECULES 3 ENZYMES 4 METABOLISM 5 GENE EXPRESSION AND REPLICATION 6 METHODS OF STRUCTURE DETERMINATION 7 METHODS OF STRUCTURE & SEQUENCE ANALYSIS

INTRODUCTION

• Introduction to the Chemistry of Life
• Water
  • Water_in_macromolecular_models
• Key chemical concepts for Structural Biology
  • Cation-pi interactions

BIOMOLECULES

• Nucleotides, Nucleic Acids, and Genetic Information
  • Z-DNA
• Amino_Acids
• Proteins: Primary Structure
• Proteins: Three-Dimensional Structure
• Protein Function: Myoglobin and Hemoglobin, Muscle Contraction, and Antibodies
  • Calmodulin_in_motion
• Carbohydrates
• Lipids and Biological Membranes
• Membrane Transport
  • A Physical Model of the β2-Adrenergic Receptor

ENZYMES

• Enzymatic Catalysis
  • Aconitase
  • Serine Hydrolases
    • Acetylcholinesterase (AChE)
      • Acetylcholine
      • Flexibility_of_aromatic_residues_in_acetylcholinesterase
      • AChE inhibitors and substrates
        • 1eve AChE-Aricept complex
        • AChE_bivalent_inhibitors
  • Triose_Phosphate_Isomerase
• Enzyme Kinetics, Inhibition, and Control
• Biochemical Signaling

METABOLISM

• Introduction to Metabolism
• Glucose Catabolism
• Glycogen Metabolism and Gluconeogenesis
• Citric Acid Cycle
• Electron Transport and Oxidative Phosphorylation
• Photosynthesis
• Lipid Metabolism
• Amino Acid Metabolism
• Mammalian Fuel Metabolism: Integration and Regulation

GENE EXPRESSION AND REPLICATION

• Nucleotide Metabolism
• Nucleic Acid Structure
• DNA Replication, Repair, and Recombination
• Transcription and RNA Processing
• Protein Synthesis
• Regulation of Gene Expression

METHODS OF STRUCTURE DETERMINATION

• X-ray
  • X-ray_crystallography
    • Asymmetric_Unit
    • Biological_Unit
  • SAXS
• NMR
• Electron Microscopy

METHODS OF STRUCTURE & SEQUENCE ANALYSIS

• STRUCTURAL ANALYSIS & VISUALIZATION
  • Chime
  • User:Wayne Decatur/Teaching Proteopedia
  • User:Wayne Decatur/Homology Modeling
  • User:Wayne Decatur/Generate Unfolded Structures
• SEQUENCE ANALYSIS
  • User:Wayne Decatur/Sequence analysis tools