Proteopedia:Table of Contents

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==INTRODUCTION==
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{{#tree:id=siteTree|root='''Chemistry of Life'''|
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* Introduction to the Chemistry of Life
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* Water
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** [[Water_in_macromolecular_models]]
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* Key chemical concepts for Structural Biology
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** [[Cation-pi interactions]]
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==BIOMOLECULES==
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*INTRODUCTION
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* Nucleotides, Nucleic Acids, and Genetic Information
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** Introduction to the Chemistry of Life
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** [[DNA]]
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** Water
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*** [[Z-DNA]]
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*** [[Water_in_macromolecular_models]]
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* [[Amino_Acids]]
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** Key chemical concepts for Structural Biology
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* Proteins: Primary Structure
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*** [[Cation-pi interactions]]
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* Proteins: Three-Dimensional Structure
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* Protein Function: Myoglobin and Hemoglobin, Muscle Contraction, and Antibodies
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** [[Calmodulin_in_motion]]
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** [[Collagen]]
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* Carbohydrates
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* Lipids and Biological Membranes
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* Membrane Transport
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** [[A Physical Model of the β2-Adrenergic Receptor]]
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==ENZYMES==
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*BIOMOLECULES
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* Enzymatic Catalysis
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** Nucleotides, Nucleic Acids, and Genetic Information
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** [[Aconitase]]
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*** [[DNA]]
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** Serine Hydrolases
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**** [[Z-DNA]]
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*** [[Acetylcholinesterase]] (AChE)
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** [[Amino_Acids]]
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**** [[Acetylcholine]]
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** Proteins: Primary Structure
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**** [[Flexibility_of_aromatic_residues_in_acetylcholinesterase]]
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** Proteins: Three-Dimensional Structure
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**** [[AChE inhibitors and substrates]]
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** Protein Function: Myoglobin and Hemoglobin, Muscle Contraction, and Antibodies
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***** [[1eve]] AChE-Aricept complex
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*** [[Calmodulin_in_motion]]
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***** [[AChE_bivalent_inhibitors]]
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*** [[Collagen]]
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**[[Triose_Phosphate_Isomerase]]
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** Carbohydrates
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* Enzyme Kinetics, Inhibition, and Control
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** Lipids and Biological Membranes
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* Biochemical Signaling
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** Membrane Transport
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*** [[A Physical Model of the β2-Adrenergic Receptor]]
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==METABOLISM==
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*ENZYMES
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* Introduction to Metabolism
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** Enzymatic Catalysis
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* Glucose Catabolism
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*** [[Aconitase]]
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* Glycogen Metabolism and Gluconeogenesis
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*** Serine Hydrolases
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* Citric Acid Cycle
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**** [[Acetylcholinesterase]] (AChE)
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* Electron Transport and Oxidative Phosphorylation
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***** [[Acetylcholine]]
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* Photosynthesis
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***** [[Flexibility_of_aromatic_residues_in_acetylcholinesterase]]
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* Lipid Metabolism
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***** [[AChE inhibitors and substrates]]
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* Amino Acid Metabolism
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****** [[1eve]] AChE-Aricept complex
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* Mammalian Fuel Metabolism: Integration and Regulation
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****** [[AChE_bivalent_inhibitors]]
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***[[Triose_Phosphate_Isomerase]]
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** Enzyme Kinetics, Inhibition, and Control
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** Biochemical Signaling
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== GENE EXPRESSION AND REPLICATION ==
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*METABOLISM
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* Nucleotide Metabolism
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** Introduction to Metabolism
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* Nucleic Acid Structure
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** Glucose Catabolism
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* DNA Replication, Repair, and Recombination
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** Glycogen Metabolism and Gluconeogenesis
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* Transcription and RNA Processing
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** Citric Acid Cycle
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* Protein Synthesis
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** Electron Transport and Oxidative Phosphorylation
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* Regulation of Gene Expression
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** Photosynthesis
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** Lipid Metabolism
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** Amino Acid Metabolism
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** Mammalian Fuel Metabolism: Integration and Regulation
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== METHODS OF STRUCTURE DETERMINATION ==
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* GENE EXPRESSION AND REPLICATION
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* X-ray
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** Nucleotide Metabolism
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**[[X-ray_crystallography]]
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** Nucleic Acid Structure
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***[[Asymmetric_Unit]]
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** DNA Replication, Repair, and Recombination
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***[[Biological_Unit]]
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** Transcription and RNA Processing
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***[[Electron_density_maps]]
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** Protein Synthesis
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**SAXS
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** Regulation of Gene Expression
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* NMR
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* Electron Microscopy
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== METHODS OF STRUCTURE & SEQUENCE ANALYSIS ==
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* METHODS OF STRUCTURE DETERMINATION
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* STRUCTURAL ANALYSIS & VISUALIZATION
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** X-ray
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** [[Chime]]
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***[[X-ray_crystallography]]
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** [[User:Wayne Decatur/Teaching Proteopedia]]
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****[[Asymmetric_Unit]]
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** [[User:Wayne Decatur/Homology Modeling]]
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****[[Biological_Unit]]
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** [[User:Wayne Decatur/Generate Unfolded Structures]]
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****[[Electron_density_maps]]
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* SEQUENCE ANALYSIS
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***SAXS
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** [[User:Wayne Decatur/Sequence analysis tools]]
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** NMR
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** Electron Microscopy
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* METHODS OF STRUCTURE & SEQUENCE ANALYSIS
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** STRUCTURAL ANALYSIS & VISUALIZATION
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*** [[Chime]]
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*** [[User:Wayne Decatur/Teaching Proteopedia]]
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*** [[User:Wayne Decatur/Homology Modeling]]
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*** [[User:Wayne Decatur/Generate Unfolded Structures]]
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** SEQUENCE ANALYSIS
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*** [[User:Wayne Decatur/Sequence analysis tools]]
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}}

Revision as of 15:57, 7 November 2009

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