Proteopedia:Table of Contents
From Proteopedia
(Difference between revisions)
| Line 40: | Line 40: | ||
**** [[Collagen]] | **** [[Collagen]] | ||
*** Protein Misfolding | *** Protein Misfolding | ||
| - | **** [[ | + | **** [[Prion protein]] |
| - | **** [[ | + | **** [[A Physical Model of the Structure of GNNQQNY from Yeast Prion Sup35]] |
** Colored Proteins & those that Change Color | ** Colored Proteins & those that Change Color | ||
| - | *** [[Green Fluorescent Protein]]; [[ | + | *** [[Green Fluorescent Protein]]; [[GFP (Hebrew)]] |
*** [[Dronpa]] | *** [[Dronpa]] | ||
*** [[Factor IX]] | *** [[Factor IX]] | ||
| Line 56: | Line 56: | ||
**** [[IgA]] | **** [[IgA]] | ||
**** [[Epitopes]] | **** [[Epitopes]] | ||
| - | **** [[ | + | **** [[Major Histocompatibility Complex Class I]] |
| - | *** [[ | + | *** [[Calmodulin in motion]] |
*** [[Myoglobin]] | *** [[Myoglobin]] | ||
| - | *** [[Hemoglobin]]; [[ | + | *** [[Hemoglobin]]; [[Hemoglobin (Hebrew)]] |
*** [[Kinesin-5]] | *** [[Kinesin-5]] | ||
** Lipids and Biological Membranes | ** Lipids and Biological Membranes | ||
** Lipid Binding Proteins | ** Lipid Binding Proteins | ||
| - | *** [[ | + | *** [[CRABP I ( Cellular Retinoic Acid Binding Protein )]] |
** Membrane Transport Proteins | ** Membrane Transport Proteins | ||
*** [[A Physical Model of the β2-Adrenergic Receptor]] | *** [[A Physical Model of the β2-Adrenergic Receptor]] | ||
| - | *** [[ | + | *** [[Lactose Permease]] |
| - | *** [[ | + | *** [[Proton Channels]] |
| - | *** [[ | + | *** [[Ion channels]] |
| - | **** [[ | + | **** [[M2 Proton Channel]] |
| - | **** [[Voltage- | + | **** [[Voltage-gated calcium channels]] |
| - | *** [[ | + | *** [[Mechanosensitive channels: opening and closing]] |
| - | ***[[ | + | ***[[Enzyme I of the Phosphoenolpyruvate:Sugar Phosphotransferase System]] |
** Prions and Intrinsically Disordered Proteins | ** Prions and Intrinsically Disordered Proteins | ||
| - | *** [[ | + | *** [[Prion protein]] |
*** [[Doppel]] | *** [[Doppel]] | ||
*** [[Intrinsically Disordered Protein]] | *** [[Intrinsically Disordered Protein]] | ||
| Line 86: | Line 86: | ||
** Viruses | ** Viruses | ||
| - | *** [[User: | + | *** [[User:Wayne Decatur/Suppression of RNA Silencing by Viruses]] |
*** Filamentous bacteriphage | *** Filamentous bacteriphage | ||
**** [[G3p]] - minor coat protein found on the surface of filamentous bacteriophage | **** [[G3p]] - minor coat protein found on the surface of filamentous bacteriophage | ||
| Line 93: | Line 93: | ||
**** [[HIV-1 Gag]] | **** [[HIV-1 Gag]] | ||
**** [[HIV-1 Gag Recruitment of Tsg101 and the Viral Budding Process]] | **** [[HIV-1 Gag Recruitment of Tsg101 and the Viral Budding Process]] | ||
| - | **** [[User: | + | **** [[User:Eric Martz/Molecular Playground/HIVDrug]] |
*** Herpes Simplex Virus | *** Herpes Simplex Virus | ||
| - | **** [[ | + | **** [[Herpes Simplex Virus Thymidine Kinase]] |
*** Influenza | *** Influenza | ||
| - | **** [[ | + | **** [[Influenza hemagglutinin]] |
| - | **** [[ | + | **** [[Avian Influenza Neuraminidase, Tamiflu and Relenza]] |
* Enzymes | * Enzymes | ||
| Line 110: | Line 110: | ||
**** [[HIV-1 protease]] | **** [[HIV-1 protease]] | ||
| - | **** [[ | + | **** [[Streptomyces griseus Aminopeptidase (SGAP)]]; [[Aminopeptidase]] |
*** [[Aconitase]] | *** [[Aconitase]] | ||
*** Cysteine Proteases | *** Cysteine Proteases | ||
*** [[Hen Egg-White (HEW) Lysozyme]] | *** [[Hen Egg-White (HEW) Lysozyme]] | ||
| - | *** [[ | + | *** [[Choline Oxidase]] |
*** [[Enzyme I of the Phosphoenolpyruvate:Sugar Phosphotransferase System]] | *** [[Enzyme I of the Phosphoenolpyruvate:Sugar Phosphotransferase System]] | ||
*** Metaloproteases | *** Metaloproteases | ||
**** [[Metalloproteases]] | **** [[Metalloproteases]] | ||
| - | **** [[ | + | **** [[Matrix metalloproteinases]] |
*** Oxidoreductases | *** Oxidoreductases | ||
**** [[NADH quinone oxidoreductase ]] | **** [[NADH quinone oxidoreductase ]] | ||
| - | *** [[ | + | *** [[Phosphofructokinase %28PFK%29]] |
| - | *** [[ | + | *** [[Pyruvate phosphate dikinase]] |
| - | *** [[ | + | *** [[Serotonin N-acetyltransferase]] |
*** Serine Hydrolases | *** Serine Hydrolases | ||
**** [[Acetylcholinesterase]] (AChE) | **** [[Acetylcholinesterase]] (AChE) | ||
***** [[Acetylcholine]] | ***** [[Acetylcholine]] | ||
| - | ***** [[ | + | ***** [[Flexibility of aromatic residues in acetylcholinesterase]] |
***** [[AChE inhibitors and substrates]] | ***** [[AChE inhibitors and substrates]] | ||
****** [[1eve]] AChE-Aricept complex; [[1eve (Arabic)]]; [[1eve (Chinese)]]; [[1eve (Italian)]]; [[1eve (Russian)]]; [[1eve (Spanish)]]; [[1eve (Turkish)]] | ****** [[1eve]] AChE-Aricept complex; [[1eve (Arabic)]]; [[1eve (Chinese)]]; [[1eve (Italian)]]; [[1eve (Russian)]]; [[1eve (Spanish)]]; [[1eve (Turkish)]] | ||
| - | ****** [[ | + | ****** [[AChE bivalent inhibitors]] |
| - | **** [[ | + | **** [[Tobacco Etch Virus (TEV) Protease]] |
| - | *** [[ | + | *** [[Serine Protease]] |
**** [[Trypsin]] | **** [[Trypsin]] | ||
| - | *** [[ | + | *** [[Triose Phosphate Isomerase]] |
** Enzyme Inhibitors | ** Enzyme Inhibitors | ||
*** [[Alpha-1-antitrypsin]] | *** [[Alpha-1-antitrypsin]] | ||
** Enzyme Kinetics, Inhibition, and Control | ** Enzyme Kinetics, Inhibition, and Control | ||
| - | ***[[ | + | ***[[Avian Influenza Neuraminidase, Tamiflu and Relenza]] |
** Biochemical Signaling | ** Biochemical Signaling | ||
| - | *** [[ | + | *** [[Nitric oxide synthase]] |
| - | *** [[Recoverin, | + | *** [[Recoverin, a calcium-activated myristoyl switch]] |
*** [[Bcl-2]] | *** [[Bcl-2]] | ||
*** [[C-Myc]] | *** [[C-Myc]] | ||
| Line 154: | Line 154: | ||
** Glucose Catabolism | ** Glucose Catabolism | ||
| - | *** [[ | + | *** [[Triose Phosphate Isomerase]] |
| - | ***[[ | + | ***[[Phosphofructokinase %28PFK%29]] |
** Glycogen Metabolism and Gluconeogenesis | ** Glycogen Metabolism and Gluconeogenesis | ||
| - | *** [[ | + | *** [[Phosphoglucose isomerase]] |
| - | *** [[ | + | *** [[Calmodulin in motion]] |
| - | *** [[ | + | *** [[Biotin Protein Ligase]] |
** Citric Acid Cycle | ** Citric Acid Cycle | ||
| Line 170: | Line 170: | ||
** Photosynthesis | ** Photosynthesis | ||
| - | *** [[ | + | *** [[Photosystem II]] |
| - | *** [[Ribulose-1,5- | + | *** [[Ribulose-1,5-bisphosphate carboxylase/oxygenase]] |
| - | *** [[ | + | *** [[PrrA in Rhodobacter sphaeroides]] |
| - | *** [[ | + | *** [[Pyruvate phosphate dikinase]] |
** Lipid Metabolism | ** Lipid Metabolism | ||
*** [[Acid-beta-glucosidase]] | *** [[Acid-beta-glucosidase]] | ||
** Amino Acid Metabolism | ** Amino Acid Metabolism | ||
| - | *** [[ | + | *** [[Aromatic amino acid hydroxylases]] |
| - | *** [[ | + | *** [[Phenylalanine hydroxylase]] |
| - | *** [[ | + | *** [[Tyrosine hydroxylase]] |
| - | *** [[ | + | *** [[ATP Phosphoribosyl Transferase]] |
| - | *** [[ | + | *** [[Isochorismate pyruvate lyase]] |
** Mammalian Fuel Metabolism: Integration and Regulation | ** Mammalian Fuel Metabolism: Integration and Regulation | ||
** Nucleotide Metabolism | ** Nucleotide Metabolism | ||
| - | *** [[ | + | *** [[Dihydrofolate reductase]] |
* Gene Expression and Replication | * Gene Expression and Replication | ||
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** DNA Replication, Repair, and Recombination | ** DNA Replication, Repair, and Recombination | ||
*** [[DNA Replication,Transcription and Translation]] | *** [[DNA Replication,Transcription and Translation]] | ||
| - | *** [[ | + | *** [[DNA Polymerase I]] |
| - | *** [[ | + | *** [[PcrA helicase]] |
| - | *** [[ | + | *** [[Fpg Nei Protein Superfamily]] - DNA Repair and Base Excision DNA Repair |
*** [[Human RecQ-Like protein 1]] - RecQ family of DNA helicases are conserved in from bacteria to man | *** [[Human RecQ-Like protein 1]] - RecQ family of DNA helicases are conserved in from bacteria to man | ||
| - | *** [[ | + | *** [[Structure of E. coli DnaC helicase loader]] |
| - | ***[[1x9n# | + | ***[[1x9n#Crystal Structure of Human DNA Ligase I bound to 5.27-adenylated.2C nicked DNA]] |
| - | *** [[ | + | *** [[Rop protein]] |
** Transcription and RNA Processing | ** Transcription and RNA Processing | ||
*** [[C-Myc]] | *** [[C-Myc]] | ||
| - | *** [[ | + | *** [[Lac repressor]] |
| - | *** [[ | + | *** [[Reverse transcriptase]] |
| - | *** [[TATA- | + | *** [[TATA-Binding Protein]] |
*** [[RSP1275]] | *** [[RSP1275]] | ||
| - | *** [[ | + | *** [[Transcription Termination Factor Rho]] |
** Protein Synthesis | ** Protein Synthesis | ||
*** [[Ribosome]] | *** [[Ribosome]] | ||
| - | *** [[ | + | *** [[SelB Recognition]] |
** Regulation of Gene Expression | ** Regulation of Gene Expression | ||
| - | *** [[ | + | *** [[Lac repressor]] |
*** [[Irr]] | *** [[Irr]] | ||
*** Oncogenes | *** Oncogenes | ||
**** [[P53]] | **** [[P53]] | ||
**** [[SRC]] | **** [[SRC]] | ||
| - | *** [[ | + | *** [[Tangible Models of Cdc42 Interacting With Intersectin]] |
* Evolution | * Evolution | ||
| Line 234: | Line 234: | ||
*** [[IgA]] | *** [[IgA]] | ||
*** [[Epitopes]] | *** [[Epitopes]] | ||
| - | ** [[ | + | ** [[Major Histocompatibility Complex Class I]] |
| - | *** [[ | + | *** [[Human beta two microglobulin]] |
* Diseases | * Diseases | ||
| Line 244: | Line 244: | ||
* Methods of Structure Determination | * Methods of Structure Determination | ||
** X-ray | ** X-ray | ||
| - | *** [[X- | + | *** [[X-ray crystallography]] |
| - | **** [[ | + | **** [[Asymmetric Unit]] |
| - | **** [[ | + | **** [[Biological Unit]] |
| - | **** [[ | + | **** [[Electron density maps]] |
*** SAXS | *** SAXS | ||
** NMR | ** NMR | ||
| - | *** [[ | + | *** [[NMR Ensembles of Models]] |
** Electron Microscopy | ** Electron Microscopy | ||
| Line 258: | Line 258: | ||
*** [[Chime]] | *** [[Chime]] | ||
*** Jmol | *** Jmol | ||
| - | **** [[S347/ | + | **** [[S347/Visualising protein structure|Visualising Protein Structure]] - Introduction to Jmol |
| - | **** [[ | + | **** [[FirstGlance in Jmol]] |
*** [[User:Wayne Decatur/Teaching Proteopedia|Teaching Proteopedia]] | *** [[User:Wayne Decatur/Teaching Proteopedia|Teaching Proteopedia]] | ||
*** [[User:Wayne Decatur/Generate Unfolded Structures|Generate Unfolded Structures]] | *** [[User:Wayne Decatur/Generate Unfolded Structures|Generate Unfolded Structures]] | ||
| Line 271: | Line 271: | ||
* Model Structures | * Model Structures | ||
| - | ** [[ | + | ** [[African Malaria Mosquito Acetylcholinesterase]] |
* Miscellaneous | * Miscellaneous | ||
| - | ** [[ | + | ** [[Molecular Playground]] |
** [[Research Groups]] | ** [[Research Groups]] | ||
}} | }} | ||
</big> | </big> | ||
Revision as of 13:56, 19 December 2009
Proteopedia Page Contributors and Editors (what is this?)
Joel L. Sussman, Eran Hodis, Wayne Decatur, Alexander Berchansky, Judy Voet, Alejandro Porto, Helen Ginn, David Canner, Israel Hanukoglu, Karen L. Lee, Arthur Cox, Yuan-Ping Pang, Tilman Schirmer, Eric Martz, Tomas Klumpler, Karl Oberholser, Angel Herraez, Jaime Prilusky
