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User:Wayne Decatur/SandboxYeastRibosome
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| - | ==Yeast Ribosome based on Cryo-EM and Protein Homology Modeling== | + | ==Yeast Ribosome based on Cryo-EM and RNA and Protein Homology Modeling== |
| - | <table width='550' align='right' cellpadding='5'><tr><td rowspan='2'> </td><td bgcolor='#eeeeee'><applet load='3jyxwvALPHAC.pdb.gz' size='540' frame='true' align='right' scene='User:Wayne_Decatur/SandboxYeastRibosome/3jyxwv/3' /></td></tr><tr><td bgcolor='#eeeeee'><center>'''The Eukaryotic | + | <table width='550' align='right' cellpadding='5'><tr><td rowspan='2'> </td><td bgcolor='#eeeeee'><applet load='3jyxwvALPHAC.pdb.gz' size='540' frame='true' align='right' scene='User:Wayne_Decatur/SandboxYeastRibosome/3jyxwv/3' /></td></tr><tr><td bgcolor='#eeeeee'><center>'''The Eukaryotic (Budding Yeast) Ribosome''' ([[3jyx]] and [[3jyw]] and [[3jyv]] ), resolution 8.9Å (<scene name='User:Wayne_Decatur/SandboxYeastRibosome/3jyxwv/3'>initial scene</scene>). <br> |
·· {{Link Toggle 70SribotRNAs}} ·· {{Link Toggle 70SribomRNA}} ·· {{Link Toggle 70SriborRNA}} ·· {{Link Toggle 70SriboProtein}} ··<br> | ·· {{Link Toggle 70SribotRNAs}} ·· {{Link Toggle 70SribomRNA}} ·· {{Link Toggle 70SriborRNA}} ·· {{Link Toggle 70SriboProtein}} ··<br> | ||
·· {{Link Toggle 70SriboAsitetRNA}} ·· {{Link Toggle 70SriboPsitetRNA}} ·· {{Link Toggle 70SriboEsitetRNA}} ·· <br> | ·· {{Link Toggle 70SriboAsitetRNA}} ·· {{Link Toggle 70SriboPsitetRNA}} ·· {{Link Toggle 70SriboEsitetRNA}} ·· <br> | ||
·· {{Link Toggle 70SriboLSU}} ·· {{Link Toggle 70SriboSSU}} ·· {{Link Toggle BlackWhiteBackground}} ·· <br></center></td></tr></table> | ·· {{Link Toggle 70SriboLSU}} ·· {{Link Toggle 70SriboSSU}} ·· {{Link Toggle BlackWhiteBackground}} ·· <br></center></td></tr></table> | ||
| + | Atomic model of a eukaryotic ribosome obtained by combined cryo-EM and RNA and protein homology modeling. Specifically, cryo-EM reconstruction of the 80S ribosome from the thermophilic fungus ''Thermomyces lanuginosus'' was used as a guide guide for building homology models of the ''S. cerevisiae'' ribosomal proteins and rRNA sequences that fit the cryo-EM map. | ||
==About this Structure== | ==About this Structure== | ||
Revision as of 04:58, 26 January 2010
Yeast Ribosome based on Cryo-EM and RNA and Protein Homology Modeling
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Atomic model of a eukaryotic ribosome obtained by combined cryo-EM and RNA and protein homology modeling. Specifically, cryo-EM reconstruction of the 80S ribosome from the thermophilic fungus Thermomyces lanuginosus was used as a guide guide for building homology models of the S. cerevisiae ribosomal proteins and rRNA sequences that fit the cryo-EM map.
About this Structure
This structure is a composite of 3 pdb files optimized for use online:
3jyx is a 3 chains structure of sequences from Thermomyces lanuginosus. Full crystallographic information is available from OCA.
3jyw is a 30 chains structure of sequences from Thermomyces lanuginosus. Full crystallographic information is available from OCA.
3jyv is a 19 chains structure of sequences from Thermomyces lanuginosus. Full crystallographic information is available from OCA.
Reference
- Taylor DJ, Devkota B, Huang AD, Topf M, Narayanan E, Sali A, Harvey SC, Frank J. Comprehensive molecular structure of the eukaryotic ribosome. Structure. 2009 Dec 9;17(12):1591-604. PMID:20004163 doi:10.1016/j.str.2009.09.015
