User:Wayne Decatur/1ig8 to 3b8a (hexokinase) morph methods

(Difference between revisions)

Revision as of 04:33, 7 January 2012

First I changed chain X of 3b8a to chain A to match 1ig8 using PDB Goodies for the protein. I knew PDB Goodies ignored and left out the heteroatoms so I changed the few lines of the glucose ligand to chain a by hand. Th heterotoms will not be used by the Yale Morph server but I need them in the original file in order to be able to use fit or compare to add them in later.

Revision as of 05:55, 6 January 2012 (edit) Wayne Decatur (Talk \| contribs) m ← Previous diff		Revision as of 04:33, 7 January 2012 (edit) (undo) Wayne Decatur (Talk \| contribs) m (→MORPH) Next diff →
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	==MORPH==		==MORPH==
-	* First I changed chain X of 3b8a to a to match 1ig8 using [http://dicsoft2.physics.iisc.ernet.in/pdbgoodies/ PDB Goodies] for the protein. I knew PDB Goodies ignored and left out the heteroatoms so I changed the few lines of the glucose ligand to chain a by hand.	+	* First I changed chain X of 3b8a to chain A to match 1ig8 using [http://dicsoft2.physics.iisc.ernet.in/pdbgoodies/ PDB Goodies] for the protein. I knew PDB Goodies ignored and left out the heteroatoms so I changed the few lines of the glucose ligand to chain a by hand. Th heterotoms will not be used by the Yale Morph server but I need them in the original file in order to be able to use fit or compare to add them in later.