1aje
From Proteopedia
(New page: 200px<br /> <applet load="1aje" size="450" color="white" frame="true" align="right" spinBox="true" caption="1aje" /> '''CDC42 FROM HUMAN, NMR, 20 STRUCTURES'''<br ...) |
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'''CDC42 FROM HUMAN, NMR, 20 STRUCTURES'''<br /> | '''CDC42 FROM HUMAN, NMR, 20 STRUCTURES'''<br /> | ||
==Overview== | ==Overview== | ||
| - | Proteins of the rho subfamily of ras GTPases have been shown to be crucial | + | Proteins of the rho subfamily of ras GTPases have been shown to be crucial components of pathways leading to cell growth and the establishment of cell polarity and mobility. Presented here is the solution structure of one such protein, Cdc42Hs, which provides insight into the structural basis for specificity of interactions between this protein and its effector and regulatory proteins. Standard heteronuclear NMR methods were used to assign the protein, and approximately 2100 distance and dihedral angle constraints were used to calculate a set of 20 structures using a combination of distance geometry and simulated annealing refinement. These structures show overall similarity to those of other GTP-binding proteins, with some exceptions. The regions corresponding to switch I and switch II in H-ras are disordered, and no evidence was found for an alpha-helix in switch II. The 13-residue insertion, which is only present in rho-subtype proteins and has been shown to be an important mediator of binding of regulatory and target proteins, forms a compact structure containing a short helix lying adjacent to the beta4-alpha3 loop. The insert forms one edge of a "switch surface" and, unexpectedly, does not change conformation upon activation of the protein by the exchange of GTP analogs for GDP. These studies indicate the insert region forms a stable invariant "footrest" for docking of regulatory and effector proteins. |
==About this Structure== | ==About this Structure== | ||
| - | 1AJE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http:// | + | 1AJE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AJE OCA]. |
==Reference== | ==Reference== | ||
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[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
| - | [[Category: Cerione, R | + | [[Category: Cerione, R A.]] |
[[Category: Dotsch, V.]] | [[Category: Dotsch, V.]] | ||
| - | [[Category: Feltham, J | + | [[Category: Feltham, J L.]] |
[[Category: Manor, D.]] | [[Category: Manor, D.]] | ||
| - | [[Category: Oswald, R | + | [[Category: Oswald, R E.]] |
[[Category: Raza, S.]] | [[Category: Raza, S.]] | ||
| - | [[Category: Sutcliffe, M | + | [[Category: Sutcliffe, M J.]] |
[[Category: Wagner, G.]] | [[Category: Wagner, G.]] | ||
[[Category: cellular signaling]] | [[Category: cellular signaling]] | ||
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[[Category: g-protein]] | [[Category: g-protein]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 11:45:10 2008'' |
Revision as of 09:45, 21 February 2008
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CDC42 FROM HUMAN, NMR, 20 STRUCTURES
Overview
Proteins of the rho subfamily of ras GTPases have been shown to be crucial components of pathways leading to cell growth and the establishment of cell polarity and mobility. Presented here is the solution structure of one such protein, Cdc42Hs, which provides insight into the structural basis for specificity of interactions between this protein and its effector and regulatory proteins. Standard heteronuclear NMR methods were used to assign the protein, and approximately 2100 distance and dihedral angle constraints were used to calculate a set of 20 structures using a combination of distance geometry and simulated annealing refinement. These structures show overall similarity to those of other GTP-binding proteins, with some exceptions. The regions corresponding to switch I and switch II in H-ras are disordered, and no evidence was found for an alpha-helix in switch II. The 13-residue insertion, which is only present in rho-subtype proteins and has been shown to be an important mediator of binding of regulatory and target proteins, forms a compact structure containing a short helix lying adjacent to the beta4-alpha3 loop. The insert forms one edge of a "switch surface" and, unexpectedly, does not change conformation upon activation of the protein by the exchange of GTP analogs for GDP. These studies indicate the insert region forms a stable invariant "footrest" for docking of regulatory and effector proteins.
About this Structure
1AJE is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.
Reference
Definition of the switch surface in the solution structure of Cdc42Hs., Feltham JL, Dotsch V, Raza S, Manor D, Cerione RA, Sutcliffe MJ, Wagner G, Oswald RE, Biochemistry. 1997 Jul 22;36(29):8755-66. PMID:9220962
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