Template:STRUCTURE 2wdv

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(New page: {{Structure |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|2wdv, resolution 3.20&Aring; (<scene name='initialview01'>default scene</scene>)}}} |SITE= <scene ...)
Current revision (12:13, 25 July 2012) (edit) (undo)
 
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{{Structure
{{Structure
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|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2wdv]], resolution 3.20&Aring; (<scene name='initialview01'>default scene</scene>)}}}
+
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2wdv]], [[Resolution|resolution]] 3.20&Aring; (<scene name='initialview01'>default scene</scene>)}}}
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|SITE= <scene name='pdbsite=AC1:Binding+Site+For+Residue+Fad+A+601'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+Fes+B+302'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+Sf4+B+303'>AC3</scene>, <scene name='pdbsite=AC4:Binding+Site+For+Residue+F3s+B+304'>AC4</scene>, <scene name='pdbsite=AC5:Binding+Site+For+Residue+Fad+E+601'>AC5</scene>, <scene name='pdbsite=AC6:Binding+Site+For+Residue+Fes+F+302'>AC6</scene>, <scene name='pdbsite=AC7:Binding+Site+For+Residue+Sf4+F+303'>AC7</scene>, <scene name='pdbsite=AC8:Binding+Site+For+Residue+F3s+F+304'>AC8</scene>, <scene name='pdbsite=AC9:Binding+Site+For+Residue+Fad+I+601'>AC9</scene>, <scene name='pdbsite=BC1:Binding+Site+For+Residue+Fes+J+302'>BC1</scene>, <scene name='pdbsite=BC2:Binding+Site+For+Residue+Sf4+J+303'>BC2</scene>, <scene name='pdbsite=BC3:Binding+Site+For+Residue+F3s+J+304'>BC3</scene>, <scene name='pdbsite=BC4:Binding+Site+For+Residue+Hem+C+1129'>BC4</scene>, <scene name='pdbsite=BC5:Binding+Site+For+Residue+Teo+A+1589'>BC5</scene>, <scene name='pdbsite=BC6:Binding+Site+For+Residue+Na+A+1590'>BC6</scene>, <scene name='pdbsite=BC7:Binding+Site+For+Residue+Hem+G+1129'>BC7</scene>, <scene name='pdbsite=BC8:Binding+Site+For+Residue+Teo+E+1589'>BC8</scene>, <scene name='pdbsite=BC9:Binding+Site+For+Residue+Na+E+1590'>BC9</scene>, <scene name='pdbsite=CC1:Binding+Site+For+Residue+Hem+K+1129'>CC1</scene>, <scene name='pdbsite=CC2:Binding+Site+For+Residue+Teo+I+1589'>CC2</scene> and <scene name='pdbsite=CC3:Binding+Site+For+Residue+Na+I+1590'>CC3</scene>
+
|LIGAND= <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=TEO:MALATE+LIKE+INTERMEDIATE'>TEO</scene>
|LIGAND= <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=TEO:MALATE+LIKE+INTERMEDIATE'>TEO</scene>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Succinate_dehydrogenase_(ubiquinone) Succinate dehydrogenase (ubiquinone)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.5.1 1.3.5.1] </span>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Succinate_dehydrogenase_(ubiquinone) Succinate dehydrogenase (ubiquinone)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.5.1 1.3.5.1] </span>
|RELATEDENTRY=[[2wdq|2wdq]], [[2wdr|2wdr]], [[1nek|1nek]], [[1nen|1nen]], [[2acz|2acz]]
|RELATEDENTRY=[[2wdq|2wdq]], [[2wdr|2wdr]], [[1nek|1nek]], [[1nen|1nen]], [[2acz|2acz]]
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wdv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdv OCA], [http://www.ebi.ac.uk/pdbsum/2wdv PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2wdv RCSB]</span>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wdv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdv OCA], [http://www.ebi.ac.uk/pdbsum/2wdv PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2wdv RCSB]</span>
-
|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014006 Ipr014006], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011281 Ipr011281], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003953 Ipr003953], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015939 Ipr015939], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013027 Ipr013027], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003952 Ipr003952], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004112 Ipr004112], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012285 Ipr012285], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001041 Ipr001041], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006058 Ipr006058], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017900 Ipr017900], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017896 Ipr017896], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004489 Ipr004489], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009051 Ipr009051], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012675 Ipr012675], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR018495 Ipr018495], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000701 Ipr000701], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014314 Ipr014314], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014361 Ipr014361], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014312 Ipr014312]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00890 PF00890], [http://pfam.sanger.ac.uk/family?acc=PF02910 PF02910], [http://pfam.sanger.ac.uk/family?acc=PF01127 PF01127]<br>UniProt : [http://www.uniprot.org/uniprot/P0AC41 P0AC41], [http://www.uniprot.org/uniprot/P07014 P07014], [http://www.uniprot.org/uniprot/P69054 P69054], [http://www.uniprot.org/uniprot/P0AC44 P0AC44]</span>
+
|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003952 Ipr003952], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015939 Ipr015939], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003953 Ipr003953], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013027 Ipr013027], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014006 Ipr014006], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011281 Ipr011281], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004112 Ipr004112], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009051 Ipr009051], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004489 Ipr004489], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012675 Ipr012675], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017900 Ipr017900], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017896 Ipr017896], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012285 Ipr012285], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001041 Ipr001041], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000701 Ipr000701], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014361 Ipr014361], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR018495 Ipr018495], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014314 Ipr014314], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014312 Ipr014312]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00890 PF00890], [http://pfam.sanger.ac.uk/family?acc=PF02910 PF02910], [http://pfam.sanger.ac.uk/family?acc=PF01127 PF01127]<br>UniProt : [http://www.uniprot.org/uniprot/P0AC41 P0AC41], [http://www.uniprot.org/uniprot/P07014 P07014], [http://www.uniprot.org/uniprot/P69054 P69054], [http://www.uniprot.org/uniprot/P0AC44 P0AC44]</span>
 +
|uPDB=2WDV|CONSURF={{!}}-
 +
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
 +
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
 +
{{!}} '''Toggle Conservation Colors:'''
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{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
 +
Rows = identical sequences:
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>A [x]</text>
 +
<name>jmb_2wdv_A</name>
 +
<title>toggle chain A</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>E [x]</text>
 +
<name>jmb_2wdv_E</name>
 +
<title>toggle chain E</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>I [x]</text>
 +
<name>jmb_2wdv_I</name>
 +
<title>toggle chain I</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>B [x]</text>
 +
<name>jmb_2wdv_B</name>
 +
<title>toggle chain B</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>F [x]</text>
 +
<name>jmb_2wdv_F</name>
 +
<title>toggle chain F</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>J [x]</text>
 +
<name>jmb_2wdv_J</name>
 +
<title>toggle chain J</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>C [x]</text>
 +
<name>jmb_2wdv_C</name>
 +
<title>toggle chain C</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>G [x]</text>
 +
<name>jmb_2wdv_G</name>
 +
<title>toggle chain G</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>K [x]</text>
 +
<name>jmb_2wdv_K</name>
 +
<title>toggle chain K</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>D [x]</text>
 +
<name>jmb_2wdv_D</name>
 +
<title>toggle chain D</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>H [x]</text>
 +
<name>jmb_2wdv_H</name>
 +
<title>toggle chain H</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>L [x]</text>
 +
<name>jmb_2wdv_L</name>
 +
<title>toggle chain L</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
}}
}}

Current revision

Drag the structure with the mouse to rotate
2wdv, resolution 3.20Å ()
Ligands: , , , , , ,
Activity: Succinate dehydrogenase (ubiquinone), with EC number 1.3.5.1
Related: 2wdq, 2wdr, 1nek, 1nen, 2acz
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml


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