Template:STRUCTURE 1emv
From Proteopedia
(Difference between revisions)
(New page: {{Structure |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1emv, resolution 1.7Å (<scene name='initialview01'>initial scene</scene>) |SITE= |LIGAND= <scene name='pdbligand=PO4:...) |
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{{Structure | {{Structure | ||
| - | |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1emv, resolution 1. | + | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1emv]], [[Resolution|resolution]] 1.70Å (<scene name='initialview01'>default scene</scene>)}}} |
| - | + | ||
|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene> | |LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene> | ||
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Deoxyribonuclease_I Deoxyribonuclease I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.1 3.1.21.1] </span> | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Deoxyribonuclease_I Deoxyribonuclease I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.1 3.1.21.1] </span> | ||
| - | |GENE= | ||
| - | |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01320 Colicin_Pyocin], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01844 HNH]</span> | ||
|RELATEDENTRY=[[1bxi|1bxi]] | |RELATEDENTRY=[[1bxi|1bxi]] | ||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1emv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1emv OCA], [http://www.ebi.ac.uk/pdbsum/1emv PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1emv RCSB]</span> | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1emv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1emv OCA], [http://www.ebi.ac.uk/pdbsum/1emv PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1emv RCSB]</span> | ||
| + | |FUNCTION={{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0015643 | text = toxin binding}}{{GO|id=GO:0005102 | text = receptor binding}}{{GO|id=GO:0003676 | text = nucleic acid binding}}{{GO|id=GO:0008270 | text = zinc ion binding}}{{GO|id=GO:0004518 | text = nuclease activity}}{{GO|id=GO:0004519 | text = endonuclease activity}}{{GO|id=GO:0016787 | text = hydrolase activity}}{{GO|id=GO:0046872 | text = metal ion binding}} | ||
| + | |PROCESS={{GO|id=GO:0030153 | text = bacteriocin immunity}}{{GO|id=GO:0019835 | text = cytolysis}}{{GO|id=GO:0009405 | text = pathogenesis}}{{GO|id=GO:0042742 | text = defense response to bacterium}} | ||
| + | |COMPONENT={{GO|id=GO:0005727 | text = extrachromosomal circular DNA}} | ||
| + | |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1emvA00 1Emva00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1emvB00 1Emvb00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000290 Ipr000290], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003058 Ipr003058], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003615 Ipr003615], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002711 Ipr002711]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF01320 PF01320], [http://pfam.sanger.ac.uk/family?acc=PF01844 PF01844]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=16944 d1emva_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=37135 d1emvb_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P13479 P13479], [http://ca.expasy.org/cgi-bin/niceprot.pl?P09883 P09883]</span> | ||
| + | |uPDB=1EMV|CONSURF={{!}}- | ||
| + | {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | ||
| + | {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | ||
| + | {{!}} '''Toggle Conservation Colors:''' | ||
| + | {{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | ||
| + | Rows = identical sequences: | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>A [x]</text> | ||
| + | <name>jmb_1emv_A</name> | ||
| + | <title>toggle chain A</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | |||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>B [x]</text> | ||
| + | <name>jmb_1emv_B</name> | ||
| + | <title>toggle chain B</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | |||
}} | }} | ||
Current revision
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| 1emv, resolution 1.70Å () | |||||||||
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| Ligands: | |||||||||
| Activity: | Deoxyribonuclease I, with EC number 3.1.21.1 | ||||||||
| Related: | 1bxi | ||||||||
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||
