This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Template:STRUCTURE 1fsj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:33, 26 July 2012) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
-
{{StructureD
+
{{Structure
-
|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1fsj, resolution 1.80&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1fsj]], [[Resolution|resolution]] 1.80&Aring; (<scene name='initialview01'>default scene</scene>)}}}
|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Deoxyribonuclease_I Deoxyribonuclease I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.1 3.1.21.1] </span>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Deoxyribonuclease_I Deoxyribonuclease I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.1 3.1.21.1] </span>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01844 HNH]</span>
 
|RELATEDENTRY=[[1bxi|1bxi]], [[1emv|1emv]], [[1fr2|1fr2]]
|RELATEDENTRY=[[1bxi|1bxi]], [[1emv|1emv]], [[1fr2|1fr2]]
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fsj OCA], [http://www.ebi.ac.uk/pdbsum/1fsj PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1fsj RCSB]</span>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fsj OCA], [http://www.ebi.ac.uk/pdbsum/1fsj PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1fsj RCSB]</span>
Line 10: Line 9:
|COMPONENT={{GO|id=GO:0005727 | text = extrachromosomal circular DNA}}
|COMPONENT={{GO|id=GO:0005727 | text = extrachromosomal circular DNA}}
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1fsjB00 1Fsjb00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1fsjC00 1Fsjc00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1fsjD00 1Fsjd00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1fsjE00 1Fsje00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003058 Ipr003058], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003615 Ipr003615], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002711 Ipr002711]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF01844 PF01844]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=83258 d1fsjb_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=83259 d1fsjc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=83260 d1fsjd_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=83261 d1fsje_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P09883 P09883]</span>
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1fsjB00 1Fsjb00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1fsjC00 1Fsjc00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1fsjD00 1Fsjd00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1fsjE00 1Fsje00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003058 Ipr003058], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003615 Ipr003615], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002711 Ipr002711]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF01844 PF01844]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=83258 d1fsjb_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=83259 d1fsjc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=83260 d1fsjd_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=83261 d1fsje_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P09883 P09883]</span>
 +
|uPDB=1FSJ|CONSURF={{!}}-
 +
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
 +
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
 +
{{!}} '''Toggle Conservation Colors:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
 +
Rows = identical sequences:
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>A [x]</text>
 +
<name>jmb_1fsj_A</name>
 +
<title>toggle chain A</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>B [x]</text>
 +
<name>jmb_1fsj_B</name>
 +
<title>toggle chain B</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>C [x]</text>
 +
<name>jmb_1fsj_C</name>
 +
<title>toggle chain C</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>D [x]</text>
 +
<name>jmb_1fsj_D</name>
 +
<title>toggle chain D</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
}}
}}

Current revision

Drag the structure with the mouse to rotate
1fsj, resolution 1.80Å ()
Ligands: ,
Activity: Deoxyribonuclease I, with EC number 3.1.21.1
Related: 1bxi, 1emv, 1fr2
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml


Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1fsj"
Personal tools