This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Template:STRUCTURE 2cdn
From Proteopedia
(Difference between revisions)
| (One intermediate revision not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{ | + | {{Structure |
| - | |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|2cdn, resolution 1.90Å (<scene name='initialview01'> | + | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2cdn]], [[Resolution|resolution]] 1.90Å (<scene name='initialview01'>default scene</scene>)}}} |
| - | + | ||
|LIGAND= <scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene> | |LIGAND= <scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene> | ||
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenylate_kinase Adenylate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.3 2.7.4.3] </span> | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenylate_kinase Adenylate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.3 2.7.4.3] </span> | ||
| - | | | + | |RELATEDENTRY=[[1p4s|1p4s]] |
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cdn OCA], [http://www.ebi.ac.uk/pdbsum/2cdn PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2cdn RCSB]</span> | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cdn OCA], [http://www.ebi.ac.uk/pdbsum/2cdn PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2cdn RCSB]</span> | ||
|FUNCTION={{GO|id=GO:0019201 | text = nucleotide kinase activity}}{{GO|id=GO:0004017 | text = adenylate kinase activity}}{{GO|id=GO:0016740 | text = transferase activity}}{{GO|id=GO:0005524 | text = ATP binding}}{{GO|id=GO:0016776 | text = phosphotransferase activity, phosphate group as acceptor}}{{GO|id=GO:0000166 | text = nucleotide binding}}{{GO|id=GO:0016301 | text = kinase activity}} | |FUNCTION={{GO|id=GO:0019201 | text = nucleotide kinase activity}}{{GO|id=GO:0004017 | text = adenylate kinase activity}}{{GO|id=GO:0016740 | text = transferase activity}}{{GO|id=GO:0005524 | text = ATP binding}}{{GO|id=GO:0016776 | text = phosphotransferase activity, phosphate group as acceptor}}{{GO|id=GO:0000166 | text = nucleotide binding}}{{GO|id=GO:0016301 | text = kinase activity}} | ||
| Line 10: | Line 9: | ||
|COMPONENT={{GO|id=GO:0005737 | text = cytoplasm}} | |COMPONENT={{GO|id=GO:0005737 | text = cytoplasm}} | ||
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=2cdnA00 2Cdna00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000850 Ipr000850], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006259 Ipr006259], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011769 Ipr011769]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00406 PF00406]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P69440 P69440]</span> | |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=2cdnA00 2Cdna00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000850 Ipr000850], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006259 Ipr006259], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011769 Ipr011769]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00406 PF00406]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P69440 P69440]</span> | ||
| + | |uPDB=2CDN|CONSURF={{!}}- | ||
| + | {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | ||
| + | {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | ||
| + | {{!}} '''Toggle Conservation Colors:''' | ||
| + | {{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | ||
| + | Rows = identical sequences: | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>A [x]</text> | ||
| + | <name>jmb_2cdn_A</name> | ||
| + | <title>toggle chain A</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | |||
}} | }} | ||
Current revision
| |||||||||
| 2cdn, resolution 1.90Å () | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Ligands: | , | ||||||||
| Activity: | Adenylate kinase, with EC number 2.7.4.3 | ||||||||
| Related: | 1p4s | ||||||||
| |||||||||
| |||||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||
