1hc8
From Proteopedia
(New page: 200px<br /><applet load="1hc8" size="450" color="white" frame="true" align="right" spinBox="true" caption="1hc8, resolution 2.80Å" /> '''CRYSTAL STRUCTURE OF...) |
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| - | [[Image:1hc8.gif|left|200px]]<br /><applet load="1hc8" size=" | + | [[Image:1hc8.gif|left|200px]]<br /><applet load="1hc8" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="1hc8, resolution 2.80Å" /> | caption="1hc8, resolution 2.80Å" /> | ||
'''CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX'''<br /> | '''CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX'''<br /> | ||
==Overview== | ==Overview== | ||
| - | The structure of a 58 nucleotide ribosomal RNA fragment buries several | + | The structure of a 58 nucleotide ribosomal RNA fragment buries several phosphate groups of a hairpin loop within a large tertiary core. During refinement of an X-ray crystal structure containing this RNA, a potassium ion was found to be contacted by six oxygen atoms from the buried phosphate groups; the ion is contained completely within the solvent-accessible surface of the RNA. The electrostatic potential at the ion chelation site is unusually large, and more than compensates for the substantial energetic penalties associated with partial dehydration of the ion and displacement of delocalized ions. The very large predicted binding free energy, approximately -30 kcal/mol, implies that the site must be occupied for the RNA to fold. These findings agree with previous studies of the ion-dependent folding of tertiary structure in this RNA, which concluded that a monovalent ion was bound in a partially dehydrated environment where Mg2+ could not easily compete for binding. By compensating the unfavorable free energy of buried phosphate groups with a chelated ion, the RNA is able to create a larger and more complex tertiary fold than would be possible otherwise. |
==About this Structure== | ==About this Structure== | ||
| - | 1HC8 is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus] with MG, K and OS as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http:// | + | 1HC8 is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus] with <scene name='pdbligand=MG:'>MG</scene>, <scene name='pdbligand=K:'>K</scene> and <scene name='pdbligand=OS:'>OS</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HC8 OCA]. |
==Reference== | ==Reference== | ||
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[[Category: Geobacillus stearothermophilus]] | [[Category: Geobacillus stearothermophilus]] | ||
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
| - | [[Category: Conn, G | + | [[Category: Conn, G L.]] |
| - | [[Category: Draper, D | + | [[Category: Draper, D E.]] |
| - | [[Category: Gittis, A | + | [[Category: Gittis, A G.]] |
| - | [[Category: Lattman, E | + | [[Category: Lattman, E E.]] |
[[Category: K]] | [[Category: K]] | ||
[[Category: MG]] | [[Category: MG]] | ||
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[[Category: tertiary structure]] | [[Category: tertiary structure]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 12:59:44 2008'' |
Revision as of 10:59, 21 February 2008
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CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX
Overview
The structure of a 58 nucleotide ribosomal RNA fragment buries several phosphate groups of a hairpin loop within a large tertiary core. During refinement of an X-ray crystal structure containing this RNA, a potassium ion was found to be contacted by six oxygen atoms from the buried phosphate groups; the ion is contained completely within the solvent-accessible surface of the RNA. The electrostatic potential at the ion chelation site is unusually large, and more than compensates for the substantial energetic penalties associated with partial dehydration of the ion and displacement of delocalized ions. The very large predicted binding free energy, approximately -30 kcal/mol, implies that the site must be occupied for the RNA to fold. These findings agree with previous studies of the ion-dependent folding of tertiary structure in this RNA, which concluded that a monovalent ion was bound in a partially dehydrated environment where Mg2+ could not easily compete for binding. By compensating the unfavorable free energy of buried phosphate groups with a chelated ion, the RNA is able to create a larger and more complex tertiary fold than would be possible otherwise.
About this Structure
1HC8 is a Protein complex structure of sequences from Escherichia coli and Geobacillus stearothermophilus with , and as ligands. Full crystallographic information is available from OCA.
Reference
A compact RNA tertiary structure contains a buried backbone-K+ complex., Conn GL, Gittis AG, Lattman EE, Misra VK, Draper DE, J Mol Biol. 2002 May 10;318(4):963-73. PMID:12054794
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