This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Template:STRUCTURE 1pfk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:35, 27 July 2012) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
-
{{StructureD
+
{{Structure
-
|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1pfk, resolution 2.40&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1pfk]], [[Resolution|resolution]] 2.40&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-
|LIGAND= <scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=FBP:SUGAR+(FRUCTOSE-1,6-DIPHOSPHATE)'>FBP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
+
|LIGAND= <scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=FBP:BETA-FRUCTOSE-1,6-DIPHOSPHATE'>FBP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/6-phosphofructokinase 6-phosphofructokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.11 2.7.1.11] </span>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/6-phosphofructokinase 6-phosphofructokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.11 2.7.1.11] </span>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00763 Bacterial_PFK]</span>
 
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pfk OCA], [http://www.ebi.ac.uk/pdbsum/1pfk PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1pfk RCSB]</span>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pfk OCA], [http://www.ebi.ac.uk/pdbsum/1pfk PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1pfk RCSB]</span>
|FUNCTION={{GO|id=GO:0003824 | text = catalytic activity}}{{GO|id=GO:0046872 | text = metal ion binding}}{{GO|id=GO:0000166 | text = nucleotide binding}}{{GO|id=GO:0005524 | text = ATP binding}}{{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0016301 | text = kinase activity}}{{GO|id=GO:0003872 | text = 6-phosphofructokinase activity}}{{GO|id=GO:0008443 | text = phosphofructokinase activity}}{{GO|id=GO:0016740 | text = transferase activity}}{{GO|id=GO:0000287 | text = magnesium ion binding}}
|FUNCTION={{GO|id=GO:0003824 | text = catalytic activity}}{{GO|id=GO:0046872 | text = metal ion binding}}{{GO|id=GO:0000166 | text = nucleotide binding}}{{GO|id=GO:0005524 | text = ATP binding}}{{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0016301 | text = kinase activity}}{{GO|id=GO:0003872 | text = 6-phosphofructokinase activity}}{{GO|id=GO:0008443 | text = phosphofructokinase activity}}{{GO|id=GO:0016740 | text = transferase activity}}{{GO|id=GO:0000287 | text = magnesium ion binding}}
Line 9: Line 8:
|COMPONENT={{GO|id=GO:0005945 | text = 6-phosphofructokinase complex}}{{GO|id=GO:0005737 | text = cytoplasm}}
|COMPONENT={{GO|id=GO:0005945 | text = 6-phosphofructokinase complex}}{{GO|id=GO:0005737 | text = cytoplasm}}
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1pfkA01 1Pfka01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1pfkA02 1Pfka02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1pfkB02 1Pfkb02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1pfkB01 1Pfkb01]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015913 Ipr015913], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015912 Ipr015912], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012828 Ipr012828], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012003 Ipr012003], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000023 Ipr000023]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00365 PF00365]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=35575 d1pfka_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=35576 d1pfkb_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P0A796 P0A796]</span>
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1pfkA01 1Pfka01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1pfkA02 1Pfka02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1pfkB02 1Pfkb02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1pfkB01 1Pfkb01]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015913 Ipr015913], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015912 Ipr015912], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012828 Ipr012828], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012003 Ipr012003], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000023 Ipr000023]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00365 PF00365]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=35575 d1pfka_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=35576 d1pfkb_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P0A796 P0A796]</span>
 +
|uPDB=1PFK|CONSURF={{!}}-
 +
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
 +
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
 +
{{!}} '''Toggle Conservation Colors:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
 +
Rows = identical sequences:
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>A [x]</text>
 +
<name>jmb_1pfk_A</name>
 +
<title>toggle chain A</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>C [x]</text>
 +
<name>jmb_1pfk_C</name>
 +
<title>toggle chain C</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
}}
}}

Current revision

Drag the structure with the mouse to rotate
1pfk, resolution 2.40Å ()
Ligands: , ,
Activity: 6-phosphofructokinase, with EC number 2.7.1.11
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml


Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools