This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Template:STRUCTURE 1bzy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (20:50, 21 October 2012) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
{{StructureD
+
{{Structure
-
|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1bzy, resolution 2.00&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1bzy]], [[Resolution|resolution]] 2.00&Aring; (<scene name='initialview01'>default scene</scene>)}}}
|LIGAND= <scene name='pdbligand=IMU:PHOSPHORIC+ACID+MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN-2-YLMETHYL]+ESTER'>IMU</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene>
|LIGAND= <scene name='pdbligand=IMU:PHOSPHORIC+ACID+MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN-2-YLMETHYL]+ESTER'>IMU</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Hypoxanthine_phosphoribosyltransferase Hypoxanthine phosphoribosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.8 2.4.2.8] </span>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Hypoxanthine_phosphoribosyltransferase Hypoxanthine phosphoribosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.8 2.4.2.8] </span>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0634 Hpt]</span>
+
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bzy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bzy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bzy RCSB], [http://www.ebi.ac.uk/pdbsum/1bzy PDBsum]</span>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bzy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bzy OCA], [http://www.ebi.ac.uk/pdbsum/1bzy PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1bzy RCSB]</span>
+
|FUNCTION={{GO|id=GO:0016757 | text = transferase activity, transferring glycosyl groups}}{{GO|id=GO:0004422 | text = hypoxanthine phosphoribosyltransferase activity}}{{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0042803 | text = protein homodimerization activity}}{{GO|id=GO:0016740 | text = transferase activity}}{{GO|id=GO:0000287 | text = magnesium ion binding}}{{GO|id=GO:0046872 | text = metal ion binding}}
|FUNCTION={{GO|id=GO:0016757 | text = transferase activity, transferring glycosyl groups}}{{GO|id=GO:0004422 | text = hypoxanthine phosphoribosyltransferase activity}}{{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0042803 | text = protein homodimerization activity}}{{GO|id=GO:0016740 | text = transferase activity}}{{GO|id=GO:0000287 | text = magnesium ion binding}}{{GO|id=GO:0046872 | text = metal ion binding}}
|PROCESS={{GO|id=GO:0006164 | text = purine nucleotide biosynthetic process}}{{GO|id=GO:0006166 | text = purine ribonucleoside salvage}}{{GO|id=GO:0009116 | text = nucleoside metabolic process}}{{GO|id=GO:0046100 | text = hypoxanthine metabolic process}}{{GO|id=GO:0051289 | text = protein homotetramerization}}{{GO|id=GO:0007610 | text = behavior}}{{GO|id=GO:0045964 | text = positive regulation of dopamine metabolic process}}
|PROCESS={{GO|id=GO:0006164 | text = purine nucleotide biosynthetic process}}{{GO|id=GO:0006166 | text = purine ribonucleoside salvage}}{{GO|id=GO:0009116 | text = nucleoside metabolic process}}{{GO|id=GO:0046100 | text = hypoxanthine metabolic process}}{{GO|id=GO:0051289 | text = protein homotetramerization}}{{GO|id=GO:0007610 | text = behavior}}{{GO|id=GO:0045964 | text = positive regulation of dopamine metabolic process}}
|COMPONENT={{GO|id=GO:0005737 | text = cytoplasm}}
|COMPONENT={{GO|id=GO:0005737 | text = cytoplasm}}
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bzyA00 1Bzya00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bzyB00 1Bzyb00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bzyC00 1Bzyc00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bzyD00 1Bzyd00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR005904 Ipr005904], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002375 Ipr002375], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000836 Ipr000836]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00156 PF00156]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=34071 d1bzya_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=34072 d1bzyb_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=34073 d1bzyc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=34074 d1bzyd_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P00492 P00492]</span>
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bzyA00 1Bzya00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bzyB00 1Bzyb00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bzyC00 1Bzyc00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bzyD00 1Bzyd00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR005904 Ipr005904], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002375 Ipr002375], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000836 Ipr000836]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00156 PF00156]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=34071 d1bzya_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=34072 d1bzyb_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=34073 d1bzyc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=34074 d1bzyd_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P00492 P00492]</span>
-
|FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=P00492 P00492]</span>
+
|uPDB=1BZY|CONSURF={{!}}-
 +
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
 +
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
 +
{{!}} '''Toggle Conservation Colors:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
 +
Rows = identical sequences:
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>A [x]</text>
 +
<name>jmb_1bzy_A</name>
 +
<title>toggle chain A</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>B [x]</text>
 +
<name>jmb_1bzy_B</name>
 +
<title>toggle chain B</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>C [x]</text>
 +
<name>jmb_1bzy_C</name>
 +
<title>toggle chain C</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>D [x]</text>
 +
<name>jmb_1bzy_D</name>
 +
<title>toggle chain D</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
}}
}}

Current revision

Drag the structure with the mouse to rotate
1bzy, resolution 2.00Å ()
Ligands: , ,
Activity: Hypoxanthine phosphoribosyltransferase, with EC number 2.4.2.8
Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml


Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools