This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Template:STRUCTURE 1hfe
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
{{Structure | {{Structure | ||
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1hfe]], [[Resolution|resolution]] 1.60Å (<scene name='initialview01'>default scene</scene>)}}} | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1hfe]], [[Resolution|resolution]] 1.60Å (<scene name='initialview01'>default scene</scene>)}}} | ||
| - | |SITE= <scene name='pdbsite=AC1:Binding+Site+For+Residue+Fe2+L+426'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+Fe2+L+427'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+Cyn+L+428'>AC3</scene>, <scene name='pdbsite=AC4:Binding+Site+For+Residue+Cyn+L+429'>AC4</scene>, <scene name='pdbsite=AC5:Binding+Site+For+Residue+Fe2+M+426'>AC5</scene>, <scene name='pdbsite=AC6:Binding+Site+For+Residue+Fe2+M+427'>AC6</scene>, <scene name='pdbsite=AC7:Binding+Site+For+Residue+Cyn+M+428'>AC7</scene>, <scene name='pdbsite=AC8:Binding+Site+For+Residue+Cyn+M+429'>AC8</scene>, <scene name='pdbsite=AC9:Binding+Site+For+Residue+Zn+S+500'>AC9</scene>, <scene name='pdbsite=BC1:Binding+Site+For+Residue+Sf4+L+422'>BC1</scene>, <scene name='pdbsite=BC2:Binding+Site+For+Residue+Sf4+L+423'>BC2</scene>, <scene name='pdbsite=BC3:Binding+Site+For+Residue+Sf4+L+424'>BC3</scene>, <scene name='pdbsite=BC4:Binding+Site+For+Residue+Pdt+L+425'>BC4</scene>, <scene name='pdbsite=BC5:Binding+Site+For+Residue+Cmo+L+430'>BC5</scene>, <scene name='pdbsite=BC6:Binding+Site+For+Residue+Cmo+L+431'>BC6</scene>, <scene name='pdbsite=BC7:Binding+Site+For+Residue+Sf4+M+422'>BC7</scene>, <scene name='pdbsite=BC8:Binding+Site+For+Residue+Sf4+M+423'>BC8</scene>, <scene name='pdbsite=BC9:Binding+Site+For+Residue+Sf4+M+424'>BC9</scene>, <scene name='pdbsite=CC1:Binding+Site+For+Residue+Pdt+M+425'>CC1</scene>, <scene name='pdbsite=CC2:Binding+Site+For+Residue+Cmo+M+430'>CC2</scene>, <scene name='pdbsite=CC3:Binding+Site+For+Residue+Cmo+M+431'>CC3</scene>, <scene name='pdbsite=CC4:Binding+Site+For+Residue+CYS+L+432'>CC4</scene> and <scene name='pdbsite=CC5:Binding+Site+For+Residue+CYS+M+433'>CC5</scene> | ||
|LIGAND= <scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=CYS:CYSTEINE'>CYS</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=PDT:1,3-PROPANEDITHIOL'>PDT</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> | |LIGAND= <scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=CYS:CYSTEINE'>CYS</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=PDT:1,3-PROPANEDITHIOL'>PDT</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> | ||
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin_hydrogenase Ferredoxin hydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.7.2 1.12.7.2] </span> | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin_hydrogenase Ferredoxin hydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.7.2 1.12.7.2] </span> | ||
| - | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hfe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hfe OCA], [http://www. | + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hfe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hfe OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hfe RCSB], [http://www.ebi.ac.uk/pdbsum/1hfe PDBsum]</span> |
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/domain/1hfeL01 1Hfel01], [http://www.cathdb.info/domain/1hfeL03 1Hfel03], [http://www.cathdb.info/domain/1hfeL02 1Hfel02], [http://www.cathdb.info/domain/1hfeM01 1Hfem01], [http://www.cathdb.info/domain/1hfeM03 1Hfem03], [http://www.cathdb.info/domain/1hfeM02 1Hfem02], [http://www.cathdb.info/domain/1hfeS00 1Hfes00], [http://www.cathdb.info/domain/1hfeT00 1Hfet00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017900 Ipr017900], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004108 Ipr004108], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017896 Ipr017896], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013352 Ipr013352], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009016 Ipr009016], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006311 Ipr006311], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008953 Ipr008953], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003149 Ipr003149], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017909 Ipr017909]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00037 PF00037], [http://pfam.sanger.ac.uk/family?acc=PF02906 PF02906], [http://pfam.sanger.ac.uk/family?acc=PF02256 PF02256]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=36018 d1hfel1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=39001 d1hfel2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=39002 d1hfem2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=36019 d1hfem1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=19640 d1hfes_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=19641 d1hfet_]<br>UniProt : [http://www.uniprot.org/uniprot/P07598 P07598], [http://www.uniprot.org/uniprot/P07603 P07603]</span> | |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/domain/1hfeL01 1Hfel01], [http://www.cathdb.info/domain/1hfeL03 1Hfel03], [http://www.cathdb.info/domain/1hfeL02 1Hfel02], [http://www.cathdb.info/domain/1hfeM01 1Hfem01], [http://www.cathdb.info/domain/1hfeM03 1Hfem03], [http://www.cathdb.info/domain/1hfeM02 1Hfem02], [http://www.cathdb.info/domain/1hfeS00 1Hfes00], [http://www.cathdb.info/domain/1hfeT00 1Hfet00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017900 Ipr017900], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004108 Ipr004108], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017896 Ipr017896], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013352 Ipr013352], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009016 Ipr009016], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006311 Ipr006311], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008953 Ipr008953], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003149 Ipr003149], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017909 Ipr017909]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00037 PF00037], [http://pfam.sanger.ac.uk/family?acc=PF02906 PF02906], [http://pfam.sanger.ac.uk/family?acc=PF02256 PF02256]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=36018 d1hfel1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=39001 d1hfel2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=39002 d1hfem2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=36019 d1hfem1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=19640 d1hfes_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=19641 d1hfet_]<br>UniProt : [http://www.uniprot.org/uniprot/P07598 P07598], [http://www.uniprot.org/uniprot/P07603 P07603]</span> | ||
|uPDB=1HFE|CONSURF={{!}}- | |uPDB=1HFE|CONSURF={{!}}- | ||
| Line 11: | Line 10: | ||
{{!}} '''Toggle Conservation Colors:''' | {{!}} '''Toggle Conservation Colors:''' | ||
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | {{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | ||
| - | Rows = identical sequences: | ||
| - | <jmol> | ||
| - | <jmolButton> | ||
| - | <script></script> | ||
| - | <text>S [x]</text> | ||
| - | <name>jmb_1hfe_S</name> | ||
| - | <title>toggle chain S</title> | ||
| - | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| - | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| - | </jmolButton> | ||
| - | </jmol> | ||
| - | <jmol> | ||
| - | <jmolButton> | ||
| - | <script></script> | ||
| - | <text>T [x]</text> | ||
| - | <name>jmb_1hfe_T</name> | ||
| - | <title>toggle chain T</title> | ||
| - | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| - | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| - | </jmolButton> | ||
| - | </jmol> | ||
| - | |||
| - | <jmol> | ||
| - | <jmolButton> | ||
| - | <script></script> | ||
| - | <text>L [x]</text> | ||
| - | <name>jmb_1hfe_L</name> | ||
| - | <title>toggle chain L</title> | ||
| - | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| - | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| - | </jmolButton> | ||
| - | </jmol> | ||
| - | <jmol> | ||
| - | <jmolButton> | ||
| - | <script></script> | ||
| - | <text>M [x]</text> | ||
| - | <name>jmb_1hfe_M</name> | ||
| - | <title>toggle chain M</title> | ||
| - | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| - | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| - | </jmolButton> | ||
| - | </jmol> | ||
}} | }} | ||
Revision as of 16:23, 21 November 2012
| |||||||||
| 1hfe, resolution 1.60Å () | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Ligands: | , , , , , , | ||||||||
| Activity: | Ferredoxin hydrogenase, with EC number 1.12.7.2 | ||||||||
| |||||||||
| |||||||||
| Resources: | FirstGlance, OCA, RCSB, PDBsum | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||

