1vub
From Proteopedia
(New page: 200px<br /><applet load="1vub" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vub, resolution 2.6Å" /> '''CCDB, A TOPOISOMERASE...) |
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| - | [[Image:1vub.jpg|left|200px]]<br /><applet load="1vub" size=" | + | [[Image:1vub.jpg|left|200px]]<br /><applet load="1vub" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="1vub, resolution 2.6Å" /> | caption="1vub, resolution 2.6Å" /> | ||
'''CCDB, A TOPOISOMERASE POISON FROM E. COLI'''<br /> | '''CCDB, A TOPOISOMERASE POISON FROM E. COLI'''<br /> | ||
==Overview== | ==Overview== | ||
| - | The crystal structure of CcdB, a protein that poisons Escherichia coli | + | The crystal structure of CcdB, a protein that poisons Escherichia coli gyrase, was determined in three crystal forms. The protein consists of a five-stranded antiparallel beta-pleated sheet followed by a C-terminal alpha-helix. In one of the loops of the sheet, a second small three-stranded antiparallel beta-sheet is inserted that sticks out of the molecule as a wing. This wing contains the LysC proteolytic cleavage site that is protected by CcdA and, therefore, forms a likely CcdA recognition site. A dimer is formed by sheet extension and by extensive hydrophobic contacts involving three of the five methionine residues and the C terminus of the alpha-helix. The surface of the dimer on the side of the alpha-helix is overall negatively charged, while the opposite side as well as the wing sheet is dominated by positive charges. We propose that the CcdB dimer binds into the central hole of the 59 kDa N-terminal fragment of GyrA, after disruption of the head dimer interface of GyrA. |
==About this Structure== | ==About this Structure== | ||
| - | 1VUB is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with CL as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http:// | + | 1VUB is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VUB OCA]. |
==Reference== | ==Reference== | ||
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[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
| - | [[Category: Bahasi, E | + | [[Category: Bahasi, E M.]] |
[[Category: Couturier, M.]] | [[Category: Couturier, M.]] | ||
| - | [[Category: Dao-Thi, M | + | [[Category: Dao-Thi, M H.]] |
[[Category: Liddington, R.]] | [[Category: Liddington, R.]] | ||
[[Category: Loris, R.]] | [[Category: Loris, R.]] | ||
| - | [[Category: Melderen, L | + | [[Category: Melderen, L Van.]] |
[[Category: Poortmans, F.]] | [[Category: Poortmans, F.]] | ||
[[Category: Wyns, L.]] | [[Category: Wyns, L.]] | ||
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[[Category: topoisomerase poison]] | [[Category: topoisomerase poison]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:38:16 2008'' |
Revision as of 13:38, 21 February 2008
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CCDB, A TOPOISOMERASE POISON FROM E. COLI
Overview
The crystal structure of CcdB, a protein that poisons Escherichia coli gyrase, was determined in three crystal forms. The protein consists of a five-stranded antiparallel beta-pleated sheet followed by a C-terminal alpha-helix. In one of the loops of the sheet, a second small three-stranded antiparallel beta-sheet is inserted that sticks out of the molecule as a wing. This wing contains the LysC proteolytic cleavage site that is protected by CcdA and, therefore, forms a likely CcdA recognition site. A dimer is formed by sheet extension and by extensive hydrophobic contacts involving three of the five methionine residues and the C terminus of the alpha-helix. The surface of the dimer on the side of the alpha-helix is overall negatively charged, while the opposite side as well as the wing sheet is dominated by positive charges. We propose that the CcdB dimer binds into the central hole of the 59 kDa N-terminal fragment of GyrA, after disruption of the head dimer interface of GyrA.
About this Structure
1VUB is a Single protein structure of sequence from Escherichia coli with as ligand. Full crystallographic information is available from OCA.
Reference
Crystal structure of CcdB, a topoisomerase poison from E. coli., Loris R, Dao-Thi MH, Bahassi EM, Van Melderen L, Poortmans F, Liddington R, Couturier M, Wyns L, J Mol Biol. 1999 Jan 29;285(4):1667-77. PMID:9917404
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