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Template:STRUCTURE 2nps

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(New page: {{Structure |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 2nps, resolution 2.5&Aring; (<scene name='initialview01'>initial scene</scene>) |SITE= |LIGAND= |ACTIVITY= |GENE= Vamp4_p...)
Current revision (14:46, 7 January 2013) (edit) (undo)
 
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{{Structure
{{Structure
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|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 2nps, resolution 2.5&Aring; (<scene name='initialview01'>initial scene</scene>)
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|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2nps]], [[Resolution|resolution]] 2.50&Aring; (<scene name='initialview01'>default scene</scene>)}}}
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|SITE=
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|LIGAND=
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|ACTIVITY=
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|GENE= Vamp4_predicted ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus]), syntaxin 13 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Rattus norvegicus]), Vti1a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Rattus norvegicus]), STX6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
|GENE= Vamp4_predicted ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus]), syntaxin 13 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Rattus norvegicus]), Vti1a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Rattus norvegicus]), STX6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam05739 SNARE], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00957 Synaptobrevin], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam05008 V-SNARE], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00193 t_SNARE]</span>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nps OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nps RCSB], [http://www.ebi.ac.uk/pdbsum/2nps PDBsum]</span>
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|RELATEDENTRY=
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|FUNCTION={{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0008565 | text = protein transporter activity}}
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nps OCA], [http://www.ebi.ac.uk/pdbsum/2nps PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2nps RCSB]</span>
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|PROCESS={{GO|id=GO:0016192 | text = vesicle-mediated transport}}{{GO|id=GO:0006886 | text = intracellular protein transport}}{{GO|id=GO:0015031 | text = protein transport}}{{GO|id=GO:0006810 | text = transport}}{{GO|id=GO:0007032 | text = endosome organization and biogenesis}}{{GO|id=GO:0048193 | text = Golgi vesicle transport}}{{GO|id=GO:0006906 | text = vesicle fusion}}
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|COMPONENT={{GO|id=GO:0016021 | text = integral to membrane}}{{GO|id=GO:0016020 | text = membrane}}{{GO|id=GO:0031410 | text = cytoplasmic vesicle}}{{GO|id=GO:0045202 | text = synapse}}{{GO|id=GO:0030054 | text = cell junction}}{{GO|id=GO:0005794 | text = Golgi apparatus}}{{GO|id=GO:0030136 | text = clathrin-coated vesicle}}{{GO|id=GO:0005802 | text = trans-Golgi network}}{{GO|id=GO:0005769 | text = early endosome}}{{GO|id=GO:0005887 | text = integral to plasma membrane}}{{GO|id=GO:0048471 | text = perinuclear region of cytoplasm}}{{GO|id=GO:0005886 | text = plasma membrane}}
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|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001388 Ipr001388], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010989 Ipr010989], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006012 Ipr006012], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000727 Ipr000727], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006011 Ipr006011], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR007705 Ipr007705], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015260 Ipr015260]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00957 PF00957], [http://pfam.sanger.ac.uk/family?acc=PF05739 PF05739], [http://pfam.sanger.ac.uk/family?acc=PF05008 PF05008]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?O70480 O70480], [http://ca.expasy.org/cgi-bin/niceprot.pl?O70319 O70319], [http://ca.expasy.org/cgi-bin/niceprot.pl?Q9JI51 Q9JI51], [http://ca.expasy.org/cgi-bin/niceprot.pl?O43752 O43752]</span>
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|uPDB=2NPS|CONSURF={{!}}-
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{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
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{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
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{{!}} '''Toggle Conservation Colors:'''
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{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
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Rows = identical sequences:
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<jmol>
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<jmolButton>
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<script></script>
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<text>A [x]</text>
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<name>jmb_2nps_A</name>
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<title>toggle chain A</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
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<script></script>
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<text>B [x]</text>
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<name>jmb_2nps_B</name>
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<title>toggle chain B</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
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<script></script>
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<text>C [x]</text>
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<name>jmb_2nps_C</name>
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<title>toggle chain C</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
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<script></script>
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<text>D [x]</text>
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<name>jmb_2nps_D</name>
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<title>toggle chain D</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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}}
}}

Current revision

Drag the structure with the mouse to rotate
2nps, resolution 2.50Å ()
Gene: Vamp4_predicted (Mus musculus), syntaxin 13 (Rattus norvegicus), Vti1a (Rattus norvegicus), STX6 (Homo sapiens)
Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml


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