This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Template:STRUCTURE 2nps

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "Template:STRUCTURE 2nps" [edit=sysop:move=sysop])
Current revision (14:46, 7 January 2013) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
{{Structure
{{Structure
-
|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 2nps, resolution 2.5&Aring; (<scene name='initialview01'>initial scene</scene>)
+
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2nps]], [[Resolution|resolution]] 2.50&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-
|SITE=
+
-
|LIGAND=
+
-
|ACTIVITY=
+
|GENE= Vamp4_predicted ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus]), syntaxin 13 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Rattus norvegicus]), Vti1a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Rattus norvegicus]), STX6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
|GENE= Vamp4_predicted ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus]), syntaxin 13 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Rattus norvegicus]), Vti1a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Rattus norvegicus]), STX6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam05739 SNARE], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00957 Synaptobrevin], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam05008 V-SNARE], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00193 t_SNARE]</span>
+
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nps OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nps RCSB], [http://www.ebi.ac.uk/pdbsum/2nps PDBsum]</span>
-
|RELATEDENTRY=
+
|FUNCTION={{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0008565 | text = protein transporter activity}}
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nps OCA], [http://www.ebi.ac.uk/pdbsum/2nps PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2nps RCSB]</span>
+
|PROCESS={{GO|id=GO:0016192 | text = vesicle-mediated transport}}{{GO|id=GO:0006886 | text = intracellular protein transport}}{{GO|id=GO:0015031 | text = protein transport}}{{GO|id=GO:0006810 | text = transport}}{{GO|id=GO:0007032 | text = endosome organization and biogenesis}}{{GO|id=GO:0048193 | text = Golgi vesicle transport}}{{GO|id=GO:0006906 | text = vesicle fusion}}
 +
|COMPONENT={{GO|id=GO:0016021 | text = integral to membrane}}{{GO|id=GO:0016020 | text = membrane}}{{GO|id=GO:0031410 | text = cytoplasmic vesicle}}{{GO|id=GO:0045202 | text = synapse}}{{GO|id=GO:0030054 | text = cell junction}}{{GO|id=GO:0005794 | text = Golgi apparatus}}{{GO|id=GO:0030136 | text = clathrin-coated vesicle}}{{GO|id=GO:0005802 | text = trans-Golgi network}}{{GO|id=GO:0005769 | text = early endosome}}{{GO|id=GO:0005887 | text = integral to plasma membrane}}{{GO|id=GO:0048471 | text = perinuclear region of cytoplasm}}{{GO|id=GO:0005886 | text = plasma membrane}}
 +
|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001388 Ipr001388], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010989 Ipr010989], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006012 Ipr006012], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000727 Ipr000727], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006011 Ipr006011], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR007705 Ipr007705], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015260 Ipr015260]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00957 PF00957], [http://pfam.sanger.ac.uk/family?acc=PF05739 PF05739], [http://pfam.sanger.ac.uk/family?acc=PF05008 PF05008]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?O70480 O70480], [http://ca.expasy.org/cgi-bin/niceprot.pl?O70319 O70319], [http://ca.expasy.org/cgi-bin/niceprot.pl?Q9JI51 Q9JI51], [http://ca.expasy.org/cgi-bin/niceprot.pl?O43752 O43752]</span>
 +
|uPDB=2NPS|CONSURF={{!}}-
 +
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
 +
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
 +
{{!}} '''Toggle Conservation Colors:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
 +
Rows = identical sequences:
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>A [x]</text>
 +
<name>jmb_2nps_A</name>
 +
<title>toggle chain A</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>B [x]</text>
 +
<name>jmb_2nps_B</name>
 +
<title>toggle chain B</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>C [x]</text>
 +
<name>jmb_2nps_C</name>
 +
<title>toggle chain C</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>D [x]</text>
 +
<name>jmb_2nps_D</name>
 +
<title>toggle chain D</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
}}
}}

Current revision

Drag the structure with the mouse to rotate
2nps, resolution 2.50Å ()
Gene: Vamp4_predicted (Mus musculus), syntaxin 13 (Rattus norvegicus), Vti1a (Rattus norvegicus), STX6 (Homo sapiens)
Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml


Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_2nps"
Personal tools