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Template:STRUCTURE 1tdh

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Current revision (10:43, 11 March 2013) (edit) (undo)
 
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{{StructureD
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{{Structure
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|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1tdh, resolution 2.1&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
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|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1tdh]], [[Resolution|resolution]] 2.10&Aring; (<scene name='initialview01'>default scene</scene>)}}}
|LIGAND= <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>
|LIGAND= <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam09292 Neil1-DNA_bind], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam06831 H2TH], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01149 Fapy_DNA_glyco]</span>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tdh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tdh RCSB], [http://www.ebi.ac.uk/pdbsum/1tdh PDBsum]</span>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tdh OCA], [http://www.ebi.ac.uk/pdbsum/1tdh PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1tdh RCSB]</span>
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|FUNCTION={{GO|id=GO:0008534 | text = oxidized purine base lesion DNA N-glycosylase activity}}{{GO|id=GO:0003684 | text = damaged DNA binding}}{{GO|id=GO:0008270 | text = zinc ion binding}}{{GO|id=GO:0003906 | text = DNA-(apurinic or apyrimidinic site) lyase activity}}{{GO|id=GO:0003824 | text = catalytic activity}}{{GO|id=GO:0016798 | text = hydrolase activity, acting on glycosyl bonds}}{{GO|id=GO:0003677 | text = DNA binding}}{{GO|id=GO:0016829 | text = lyase activity}}{{GO|id=GO:0016787 | text = hydrolase activity}}
|FUNCTION={{GO|id=GO:0008534 | text = oxidized purine base lesion DNA N-glycosylase activity}}{{GO|id=GO:0003684 | text = damaged DNA binding}}{{GO|id=GO:0008270 | text = zinc ion binding}}{{GO|id=GO:0003906 | text = DNA-(apurinic or apyrimidinic site) lyase activity}}{{GO|id=GO:0003824 | text = catalytic activity}}{{GO|id=GO:0016798 | text = hydrolase activity, acting on glycosyl bonds}}{{GO|id=GO:0003677 | text = DNA binding}}{{GO|id=GO:0016829 | text = lyase activity}}{{GO|id=GO:0016787 | text = hydrolase activity}}
|PROCESS={{GO|id=GO:0006281 | text = DNA repair}}{{GO|id=GO:0006974 | text = response to DNA damage stimulus}}{{GO|id=GO:0006284 | text = base-excision repair}}{{GO|id=GO:0008152 | text = metabolic process}}
|PROCESS={{GO|id=GO:0006281 | text = DNA repair}}{{GO|id=GO:0006974 | text = response to DNA damage stimulus}}{{GO|id=GO:0006284 | text = base-excision repair}}{{GO|id=GO:0008152 | text = metabolic process}}
|COMPONENT={{GO|id=GO:0005634 | text = nucleus}}
|COMPONENT={{GO|id=GO:0005634 | text = nucleus}}
|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010979 Ipr010979], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015886 Ipr015886], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015371 Ipr015371], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015887 Ipr015887], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012319 Ipr012319]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF01149 PF01149], [http://pfam.sanger.ac.uk/family?acc=PF06831 PF06831], [http://pfam.sanger.ac.uk/family?acc=PF09292 PF09292]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=106772 d1tdha1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=106773 d1tdha2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=106774 d1tdha3]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q96FI4 Q96FI4]</span>
|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010979 Ipr010979], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015886 Ipr015886], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015371 Ipr015371], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015887 Ipr015887], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012319 Ipr012319]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF01149 PF01149], [http://pfam.sanger.ac.uk/family?acc=PF06831 PF06831], [http://pfam.sanger.ac.uk/family?acc=PF09292 PF09292]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=106772 d1tdha1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=106773 d1tdha2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=106774 d1tdha3]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q96FI4 Q96FI4]</span>
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|FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=Q96FI4 Q96FI4]</span>
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|uPDB=1TDH|CONSURF={{!}}-
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{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
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{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
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{{!}} '''Toggle Conservation Colors:'''
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{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
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Rows = identical sequences:
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<jmol>
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<jmolButton>
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<script></script>
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<text>A [x]</text>
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<name>jmb_1tdh_A</name>
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<title>toggle chain A</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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}}
}}

Current revision

Drag the structure with the mouse to rotate
1tdh, resolution 2.10Å ()
Ligands:
Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml


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