This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Template:STRUCTURE 1hti

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:03, 11 March 2013) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{StructureD
+
{{Structure
-
|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1hti, resolution 2.8&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1hti]], [[Resolution|resolution]] 2.80&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-
|LIGAND= <scene name='pdbligand=PGA:SUGAR+(2-PHOSPHOGLYCOLIC+ACID)'>PGA</scene>
+
|LIGAND= <scene name='pdbligand=PGA:2-PHOSPHOGLYCOLIC+ACID'>PGA</scene>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00311 TIM]</span>
+
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hti FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hti OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hti RCSB], [http://www.ebi.ac.uk/pdbsum/1hti PDBsum]</span>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hti FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hti OCA], [http://www.ebi.ac.uk/pdbsum/1hti PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1hti RCSB]</span>
+
|FUNCTION={{GO|id=GO:0016853 | text = isomerase activity}}{{GO|id=GO:0004807 | text = triose-phosphate isomerase activity}}{{GO|id=GO:0003824 | text = catalytic activity}}
|FUNCTION={{GO|id=GO:0016853 | text = isomerase activity}}{{GO|id=GO:0004807 | text = triose-phosphate isomerase activity}}{{GO|id=GO:0003824 | text = catalytic activity}}
|PROCESS={{GO|id=GO:0006096 | text = glycolysis}}{{GO|id=GO:0006094 | text = gluconeogenesis}}{{GO|id=GO:0006098 | text = pentose-phosphate shunt}}{{GO|id=GO:0006633 | text = fatty acid biosynthetic process}}{{GO|id=GO:0008610 | text = lipid biosynthetic process}}{{GO|id=GO:0008152 | text = metabolic process}}
|PROCESS={{GO|id=GO:0006096 | text = glycolysis}}{{GO|id=GO:0006094 | text = gluconeogenesis}}{{GO|id=GO:0006098 | text = pentose-phosphate shunt}}{{GO|id=GO:0006633 | text = fatty acid biosynthetic process}}{{GO|id=GO:0008610 | text = lipid biosynthetic process}}{{GO|id=GO:0008152 | text = metabolic process}}
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1htiA00 1Htia00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1htiB00 1Htib00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000652 Ipr000652], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013785 Ipr013785]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00121 PF00121]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=28455 d1htia_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=28456 d1htib_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P60174 P60174]</span>
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1htiA00 1Htia00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1htiB00 1Htib00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000652 Ipr000652], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013785 Ipr013785]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00121 PF00121]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=28455 d1htia_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=28456 d1htib_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P60174 P60174]</span>
-
|FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=P60174 P60174]</span>
+
|uPDB=1HTI|CONSURF={{!}}-
 +
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
 +
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
 +
{{!}} '''Toggle Conservation Colors:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
 +
Rows = identical sequences:
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>A [x]</text>
 +
<name>jmb_1hti_A</name>
 +
<title>toggle chain A</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>B [x]</text>
 +
<name>jmb_1hti_B</name>
 +
<title>toggle chain B</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
}}
}}

Current revision

Drag the structure with the mouse to rotate
1hti, resolution 2.80Å ()
Ligands:
Activity: Triose-phosphate isomerase, with EC number 5.3.1.1
Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml


Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1hti"
Personal tools