This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Template:STRUCTURE 1bl8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:08, 11 March 2013) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{StructureD
+
{{Structure
-
|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1bl8, resolution 3.20&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1bl8]], [[Resolution|resolution]] 3.20&Aring; (<scene name='initialview01'>default scene</scene>)}}}
|LIGAND= <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>
|LIGAND= <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam07885 Ion_trans_2]</span>
+
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bl8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bl8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bl8 RCSB], [http://www.ebi.ac.uk/pdbsum/1bl8 PDBsum]</span>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bl8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bl8 OCA], [http://www.ebi.ac.uk/pdbsum/1bl8 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1bl8 RCSB]</span>
+
|FUNCTION={{GO|id=GO:0005216 | text = ion channel activity}}{{GO|id=GO:0005249 | text = voltage-gated potassium channel activity}}{{GO|id=GO:0005244 | text = voltage-gated ion channel activity}}
|FUNCTION={{GO|id=GO:0005216 | text = ion channel activity}}{{GO|id=GO:0005249 | text = voltage-gated potassium channel activity}}{{GO|id=GO:0005244 | text = voltage-gated ion channel activity}}
|PROCESS={{GO|id=GO:0006810 | text = transport}}{{GO|id=GO:0006811 | text = ion transport}}{{GO|id=GO:0006813 | text = potassium ion transport}}
|PROCESS={{GO|id=GO:0006810 | text = transport}}{{GO|id=GO:0006811 | text = ion transport}}{{GO|id=GO:0006813 | text = potassium ion transport}}
|COMPONENT={{GO|id=GO:0016021 | text = integral to membrane}}{{GO|id=GO:0016020 | text = membrane}}{{GO|id=GO:0008076 | text = voltage-gated potassium channel complex}}
|COMPONENT={{GO|id=GO:0016021 | text = integral to membrane}}{{GO|id=GO:0016020 | text = membrane}}{{GO|id=GO:0008076 | text = voltage-gated potassium channel complex}}
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bl8A00 1Bl8A00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bl8B00 1Bl8B00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bl8C00 1Bl8C00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bl8D00 1Bl8D00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003091 Ipr003091], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013099 Ipr013099]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF07885 PF07885]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=43652 d1bl8a_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=43653 d1bl8b_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=43654 d1bl8c_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=43655 d1bl8d_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P0A334 P0A334]</span>
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bl8A00 1Bl8A00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bl8B00 1Bl8B00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bl8C00 1Bl8C00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bl8D00 1Bl8D00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003091 Ipr003091], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013099 Ipr013099]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF07885 PF07885]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=43652 d1bl8a_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=43653 d1bl8b_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=43654 d1bl8c_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=43655 d1bl8d_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P0A334 P0A334]</span>
 +
|uPDB=1BL8|CONSURF={{!}}-
 +
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
 +
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
 +
{{!}} '''Toggle Conservation Colors:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
 +
Rows = identical sequences:
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>A [x]</text>
 +
<name>jmb_1bl8_A</name>
 +
<title>toggle chain A</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>B [x]</text>
 +
<name>jmb_1bl8_B</name>
 +
<title>toggle chain B</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>C [x]</text>
 +
<name>jmb_1bl8_C</name>
 +
<title>toggle chain C</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>D [x]</text>
 +
<name>jmb_1bl8_D</name>
 +
<title>toggle chain D</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
}}
}}

Current revision

Drag the structure with the mouse to rotate
1bl8, resolution 3.20Å ()
Ligands:
Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml


Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1bl8"
Personal tools