This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Template:STRUCTURE 1xbn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Structure |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1xbn, resolution 2.50&Aring; (<scene name='initialview01'>initial scene</scene>) |SITE= |LIGAND= <scene name='pdbligand=HEM...)
Current revision (11:15, 11 March 2013) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
{{Structure
{{Structure
-
|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1xbn, resolution 2.50&Aring; (<scene name='initialview01'>initial scene</scene>)
+
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1xbn]], [[Resolution|resolution]] 2.50&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-
|SITE=
+
|LIGAND= <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene>
|LIGAND= <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene>
-
|ACTIVITY=
+
|GENE= Tar4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273068 Thermoanaerobacter tengcongensis MB4])
-
|GENE= Tar4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119072 Thermoanaerobacter tengcongensis])
+
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xbn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xbn RCSB], [http://www.ebi.ac.uk/pdbsum/1xbn PDBsum]</span>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam07700 HNOB]</span>
+
|FUNCTION={{GO|id=GO:0004383 | text = guanylate cyclase activity}}{{GO|id=GO:0004871 | text = signal transducer activity}}{{GO|id=GO:0020037 | text = heme binding}}
-
|RELATEDENTRY=
+
|PROCESS={{GO|id=GO:0007165 | text = signal transduction}}{{GO|id=GO:0006935 | text = chemotaxis}}{{GO|id=GO:0006182 | text = cGMP biosynthetic process}}
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xbn OCA], [http://www.ebi.ac.uk/pdbsum/1xbn PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1xbn RCSB]</span>
+
|COMPONENT={{GO|id=GO:0016020 | text = membrane}}
 +
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1xbnA00 1Xbna00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004089 Ipr004089], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011644 Ipr011644], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR005829 Ipr005829], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004090 Ipr004090]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF07700 PF07700]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=109541 d1xbna_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q8RBX6 Q8RBX6]</span>
 +
|uPDB=1XBN|CONSURF={{!}}-
 +
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
 +
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
 +
{{!}} '''Toggle Conservation Colors:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
 +
Rows = identical sequences:
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>A [x]</text>
 +
<name>jmb_1xbn_A</name>
 +
<title>toggle chain A</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
}}
}}

Current revision

Drag the structure with the mouse to rotate
1xbn, resolution 2.50Å ()
Ligands: ,
Gene: Tar4 (Thermoanaerobacter tengcongensis MB4)
Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml


Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1xbn"
Personal tools