This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Template:STRUCTURE 1bm0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "Template:STRUCTURE 1bm0" [edit=sysop:move=sysop])
Current revision (18:56, 24 March 2013) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
{{Structure
{{Structure
-
|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1bm0, resolution 2.50&Aring; (<scene name='initialview01'>initial scene</scene>)
+
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1bm0]], [[Resolution|resolution]] 2.50&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-
|SITE=
+
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bm0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bm0 RCSB], [http://www.ebi.ac.uk/pdbsum/1bm0 PDBsum]</span>
-
|LIGAND=
+
|FUNCTION={{GO|id=GO:0003677 | text = DNA binding}}{{GO|id=GO:0016209 | text = antioxidant activity}}{{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0005507 | text = copper ion binding}}{{GO|id=GO:0015643 | text = toxin binding}}{{GO|id=GO:0030170 | text = pyridoxal phosphate binding}}{{GO|id=GO:0008144 | text = drug binding}}{{GO|id=GO:0019825 | text = oxygen binding}}{{GO|id=GO:0046872 | text = metal ion binding}}{{GO|id=GO:0008289 | text = lipid binding}}{{GO|id=GO:0005504 | text = fatty acid binding}}
-
|ACTIVITY=
+
|PROCESS={{GO|id=GO:0019836 | text = hemolysis by symbiont of host red blood cells}}{{GO|id=GO:0051659 | text = maintenance of mitochondrion localization}}{{GO|id=GO:0043066 | text = negative regulation of apoptosis}}{{GO|id=GO:0009267 | text = cellular response to starvation}}{{GO|id=GO:0043072 | text = negative regulation of non-apoptotic programmed cell death}}{{GO|id=GO:0006810 | text = transport}}
-
|GENE=
+
|COMPONENT={{GO|id=GO:0005576 | text = extracellular region}}{{GO|id=GO:0005615 | text = extracellular space}}{{GO|id=GO:0043234 | text = protein complex}}
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00015 ALBUMIN]</span>
+
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bm0A03 1Bm0A03], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bm0A06 1Bm0A06], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bm0A05 1Bm0A05], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bm0A02 1Bm0A02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bm0A04 1Bm0A04], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bm0A01 1Bm0A01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bm0B01 1Bm0B01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bm0B02 1Bm0B02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bm0B04 1Bm0B04], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bm0B05 1Bm0B05], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bm0B06 1Bm0B06], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1bm0B03 1Bm0B03]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000264 Ipr000264], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001703 Ipr001703], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014760 Ipr014760]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00273 PF00273]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=19350 d1bm0a3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=19349 d1bm0a2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=19348 d1bm0a1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=19352 d1bm0b2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=19353 d1bm0b3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=19351 d1bm0b1]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P02768 P02768]</span>
-
|RELATEDENTRY=
+
|uPDB=1BM0|CONSURF={{!}}-
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bm0 OCA], [http://www.ebi.ac.uk/pdbsum/1bm0 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1bm0 RCSB]</span>
+
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
 +
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
 +
{{!}} '''Toggle Conservation Colors:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
 +
Rows = identical sequences:
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>A [x]</text>
 +
<name>jmb_1bm0_A</name>
 +
<title>toggle chain A</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>B [x]</text>
 +
<name>jmb_1bm0_B</name>
 +
<title>toggle chain B</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
}}
}}

Current revision

Drag the structure with the mouse to rotate
1bm0, resolution 2.50Å ()
Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml


Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools