This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Template:STRUCTURE 3odu
From Proteopedia
(Difference between revisions)
(New page: {{Structure |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|3odu, resolution 2.50Å (<scene name='initialview01'>default scene</scene>)}}}...) |
|||
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
{{Structure | {{Structure | ||
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[3odu]], [[Resolution|resolution]] 2.50Å (<scene name='initialview01'>default scene</scene>)}}} | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[3odu]], [[Resolution|resolution]] 2.50Å (<scene name='initialview01'>default scene</scene>)}}} | ||
| - | |SITE= <scene name='pdbsite=AC1:Binding+Site+For+Residue+Itd+A+1500'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+Itd+B+1500'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+Olc+A+1600'>AC3</scene>, <scene name='pdbsite=AC4:Binding+Site+For+Residue+Olc+B+1601'>AC4</scene>, <scene name='pdbsite=AC5:Binding+Site+For+Residue+Olc+B+1602'>AC5</scene>, <scene name='pdbsite=AC6:Binding+Site+For+Residue+Olc+A+1603'>AC6</scene>, <scene name='pdbsite=AC7:Binding+Site+For+Residue+Olc+A+1604'>AC7</scene>, <scene name='pdbsite=AC8:Binding+Site+For+Residue+Ola+B+1605'>AC8</scene>, <scene name='pdbsite=AC9:Binding+Site+For+Residue+Ola+B+1606'>AC9</scene>, <scene name='pdbsite=BC1:Binding+Site+For+Residue+Ola+B+1607'>BC1</scene>, <scene name='pdbsite=BC2:Binding+Site+For+Residue+Ola+B+1608'>BC2</scene>, <scene name='pdbsite=BC3:Binding+Site+For+Residue+Ola+B+1609'>BC3</scene> and <scene name='pdbsite=BC4:Binding+Site+For+Residue+Ola+A+1610'>BC4</scene> | ||
|LIGAND= <scene name='pdbligand=ITD:(6,6-DIMETHYL-5,6-DIHYDROIMIDAZO[2,1-B][1,3]THIAZOL-3-YL)METHYL+N,N-DICYCLOHEXYLIMIDOTHIOCARBAMATE'>ITD</scene>, <scene name='pdbligand=OLA:OLEIC+ACID'>OLA</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene> | |LIGAND= <scene name='pdbligand=ITD:(6,6-DIMETHYL-5,6-DIHYDROIMIDAZO[2,1-B][1,3]THIAZOL-3-YL)METHYL+N,N-DICYCLOHEXYLIMIDOTHIOCARBAMATE'>ITD</scene>, <scene name='pdbligand=OLA:OLEIC+ACID'>OLA</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene> | ||
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span> | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span> | ||
| - | |GENE= CXCR4, CXCR4_HUMAN, E ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= Homo | + | |GENE= CXCR4, CXCR4_HUMAN, E ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens]) |
|RELATEDENTRY=[[3oe0|3oe0]], [[3oe6|3oe6]], [[3oe8|3oe8]], [[3oe9|3oe9]] | |RELATEDENTRY=[[3oe0|3oe0]], [[3oe6|3oe6]], [[3oe8|3oe8]], [[3oe9|3oe9]] | ||
| - | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3odu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3odu OCA], [http://www.ebi.ac.uk/pdbsum/3odu PDBsum], [http://www. | + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3odu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3odu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3odu RCSB], [http://www.ebi.ac.uk/pdbsum/3odu PDBsum]</span> |
| + | |SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017452 Ipr017452], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR023346 Ipr023346], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001277 Ipr001277], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000355 Ipr000355], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000276 Ipr000276], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR023347 Ipr023347], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002196 Ipr002196], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001165 Ipr001165], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR022726 Ipr022726]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00001 PF00001], [http://pfam.sanger.ac.uk/family?acc=PF00959 PF00959], [http://pfam.sanger.ac.uk/family?acc=PF12109 PF12109]</span> | ||
}} | }} | ||
Current revision
| |||||||
| 3odu, resolution 2.50Å () | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , , | ||||||
| Gene: | CXCR4, CXCR4_HUMAN, E (Homo sapiens) | ||||||
| Activity: | Lysozyme, with EC number 3.2.1.17 | ||||||
| Related: | 3oe0, 3oe6, 3oe8, 3oe9 | ||||||
| |||||||
| Resources: | FirstGlance, OCA, RCSB, PDBsum | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
