This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Sandbox Reserved 20

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (03:52, 14 May 2013) (edit) (undo)
 
(25 intermediate revisions not shown.)
Line 1: Line 1:
-
| To get started:
+
<!-- DO NOT DELETE THE TEMPLATE LINE -->
-
* Click the ''edit this page'' tab at the top. <font color="red">Save the page after each step, then edit it again.</font>
+
{{Template:Sandbox Reserved Eric Martz}}
 +
<!-- INSERT YOUR SCENES AND TEXT BELOW THIS LINE -->
-
* Click the '''3D''' button (when editing, above the wikitext box) to insert Jmol, similar to the one below.
+
<Structure load='1d66' size='450' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />
-
<applet load='1w6l' size='300' frame='true' align='right' caption='Insert caption here' />
+
-
* '''show''' the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
 
-
Click here to see what can be achieved <scene name='Sandbox_Reserved_20/Copper-centers/1'>TextToBeDisplayed</scene>
 
-
* Add a description of your scene.-Ex. " CotA laccase from ''Bacillus subtilis'' with two '''copper centers'''" -
+
 
-
Use the buttons above the wikitext box for''' bold''', ''italics'', [[#|links]], <big><big><b>headlines</b></big></big>, etc.
+
#The surface of the Gal4 DNA-binding domain that contacts DNA <scene name='Sandbox_Reserved_20/Gal4_charge/2'>has only positive (blue) charges</scene>.
-
More help: [[Help:Editing]]
+
#<scene name='Sandbox_Reserved_20/Gal4_conservation2/1'>Lysine 18 is highly conserved</scene> (burgandy color) because it participates in recognizing the CCG sequence of DNA.
-
|}
+

Current revision

This Sandbox is Reserved from May 10, 2015, through July 31, 2015 for use by the class Protein 3D Structure Visualization & Structural Bioinformatics taught by Eric Martz and Keiichi Namba at Osaka University, Japan. This reservation includes Sandbox Reserved 1 through Sandbox Reserved 10. Syllabus.
To get started:
  • Click the 'edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Getting Started in Proteopedia, Help:Editing, Main Help Page.

Insert caption here

Drag the structure with the mouse to rotate


  1. The surface of the Gal4 DNA-binding domain that contacts DNA .
  2. (burgandy color) because it participates in recognizing the CCG sequence of DNA.
Personal tools