User:Wayne Decatur/4ay9 pymol

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m (In PyMol)
m (In PyMol)
Line 4: Line 4:
<pre>
<pre>
-
select chain E and 16-17
+
select NeedsToBeLoop, chain E and resid 16-17
-
alter sele/, ss='L' # assign residues 16-17 as loop
+
alter NeedsToBeLoop, ss='L' # assign residues 16-17 as loop
rebuild
rebuild
</pre>
</pre>

Revision as of 01:35, 5 July 2013

Making images with 4ay9

In PyMol

I found that for some reason part of the structure that in the paper is represented as a loop, PyMol was making a helix. It was small and not overly noticeable but to perfect images for Stacia's slides. I wanted to deal with it.

select NeedsToBeLoop, chain E and resid 16-17
alter NeedsToBeLoop, ss='L'             # assign residues 16-17 as loop
rebuild    

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Wayne Decatur

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