Journal:JBIC:21
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We have recently determined the <scene name='55/558329/Cv/10'>crystal structure of tyrosinase</scene> from ''Bacillus megaterium'' (TyrBm) and revealed that this enzyme has tighter binding of CuA in comparison to CuB. Using a rational design approach and structure-function investigations, we identified four residues at the second shell of the active site, having an impact on Cu uptake. The <scene name='55/558329/Cv/11'>active site and the second shell residues of WT TyrBm</scene> (PDB [[3nq0]]) is shown. <scene name='55/558329/Cv/9'>Six His residues composing the active site</scene> are colored in green and are ligating only CuA which is shown as the sphere. <scene name='55/558329/Cv/12'>Second shell residues Met61, Met184, Phe197 and Asn205</scene> are colored in orange and in this article were investigated by site directed mutagenesis. Looking at the crystal structure of WT TyrBm, we have found that a major role of the highly conserved Asn205 residue is to stabilize the orientation of the His204 imidazole ring in the binding site, thereby promoting the correct coordination of CuB. <scene name='55/558329/Cv/14'>The active site of variant V218F</scene> (PDB [[4hd4]]) is shown. Residues His60 and Met61 colored in green and orange respectively. Residue His60 is shown in two conformations, coordinating CuA in the active site or flipped out towards Met61. | We have recently determined the <scene name='55/558329/Cv/10'>crystal structure of tyrosinase</scene> from ''Bacillus megaterium'' (TyrBm) and revealed that this enzyme has tighter binding of CuA in comparison to CuB. Using a rational design approach and structure-function investigations, we identified four residues at the second shell of the active site, having an impact on Cu uptake. The <scene name='55/558329/Cv/11'>active site and the second shell residues of WT TyrBm</scene> (PDB [[3nq0]]) is shown. <scene name='55/558329/Cv/9'>Six His residues composing the active site</scene> are colored in green and are ligating only CuA which is shown as the sphere. <scene name='55/558329/Cv/12'>Second shell residues Met61, Met184, Phe197 and Asn205</scene> are colored in orange and in this article were investigated by site directed mutagenesis. Looking at the crystal structure of WT TyrBm, we have found that a major role of the highly conserved Asn205 residue is to stabilize the orientation of the His204 imidazole ring in the binding site, thereby promoting the correct coordination of CuB. <scene name='55/558329/Cv/14'>The active site of variant V218F</scene> (PDB [[4hd4]]) is shown. Residues His60 and Met61 colored in green and orange respectively. Residue His60 is shown in two conformations, coordinating CuA in the active site or flipped out towards Met61. | ||
| - | Substitution of Asn205 to Ala or Asp residues resulted in significant reduction in copper uptake and enzymatic activity. In the crystal structure of variant N205D, residue Asp205 is turned towards Arg209 and therefore cannot form a polar bond with His204. | + | Substitution of Asn205 to Ala or Asp residues resulted in significant reduction in copper uptake and enzymatic activity. In the crystal structure of variant N205D, residue <scene name='55/558329/Cv/20'>Asp205 is turned towards Arg209 and therefore cannot form a polar bond with His204</scene>. |
Furthermore, Phe197, Met61 and Met184, which are also located at the entrance to the active site, were found to play an important role in Cu uptake. Substitution of a bulky Phe197 to Ala, resulted in higher Cu uptake, while mutations at positions 61 and 184, had an opposite effect. <scene name='55/558329/Cv/18'>The active site of variant F197A</scene> ([[4j6t]]). Six His residues composing the active site are colored in green and are ligating CuA and CuB ions which are shown as spheres. Alanine residue at position 197 is colored in yellow. In addition, it was found that these residues are also important for enhancing the diphenolase activity of the enzyme. Therefore, we can suggest that a Cu ion entering the active site (CuA) first associates with the methionine residues followed by its transfer to His60 in its flipped out conformation. Following Cu binding, His60 alters its conformation and transfers CuA into the active site in a paddle-like motion. We propose that CuB passes only through Asp205 and Phe197. The proposed pathway clarifies the previously reported observations of TyrBm’s tighter binding of CuA in comparison to CuB. | Furthermore, Phe197, Met61 and Met184, which are also located at the entrance to the active site, were found to play an important role in Cu uptake. Substitution of a bulky Phe197 to Ala, resulted in higher Cu uptake, while mutations at positions 61 and 184, had an opposite effect. <scene name='55/558329/Cv/18'>The active site of variant F197A</scene> ([[4j6t]]). Six His residues composing the active site are colored in green and are ligating CuA and CuB ions which are shown as spheres. Alanine residue at position 197 is colored in yellow. In addition, it was found that these residues are also important for enhancing the diphenolase activity of the enzyme. Therefore, we can suggest that a Cu ion entering the active site (CuA) first associates with the methionine residues followed by its transfer to His60 in its flipped out conformation. Following Cu binding, His60 alters its conformation and transfers CuA into the active site in a paddle-like motion. We propose that CuB passes only through Asp205 and Phe197. The proposed pathway clarifies the previously reported observations of TyrBm’s tighter binding of CuA in comparison to CuB. | ||
Revision as of 10:36, 1 September 2013
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- ↑ REF
This page complements a publication in scientific journals and is one of the Proteopedia's Interactive 3D Complement pages. For aditional details please see I3DC.
