Biological Unit: Showing
From Proteopedia
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| - | This article explains how to show the biological unit (biological assembly) in a scene in Proteopedia. For background, see [[Biological Unit]] and [[Asymmetric Unit]]. | + | This article explains how to show the biological unit (biological assembly) in a scene in Proteopedia. If you simply want to see the biological unit, go to [[Biological Unit#Visualizing the Biological Unit|Visualizing the Biological Unit]]. For background, see [[Biological Unit]] and [[Asymmetric Unit]]. |
:1. Go to the [http://watcut.uwaterloo.ca/cgi-bin/makemultimer/ MakeMultimer Server]. | :1. Go to the [http://watcut.uwaterloo.ca/cgi-bin/makemultimer/ MakeMultimer Server]. | ||
Revision as of 17:09, 9 September 2013
This article explains how to show the biological unit (biological assembly) in a scene in Proteopedia. If you simply want to see the biological unit, go to Visualizing the Biological Unit. For background, see Biological Unit and Asymmetric Unit.
- 1. Go to the MakeMultimer Server.
- 2. Submit the PDB code.
- 3. Click on the mm1.pdb link to download the biological assembly PDB file. For example, if you submitted 1hho, there will be a link to 1hho_mm1.pdb.
- Optionally you may examine all the biological units with the links to FirstGlance in Jmol.
- 4. Upload the mm1.pdb file into Proteopedia, and use it in a molecular scene, following the instructions at Help:Uploading molecules.
You can also find the MakeMultimer Server with FirstGlance in Jmol. Every page in Proteopedia titled with a PDB code has a link to FirstGlance. While viewing the asymmetric unit in FirstGlance, click on Key Resources, then on Probable Quaternary Structure, and there you will find the link to MakeMultimer.
