2o7c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2o7c" size="350" color="white" frame="true" align="right" spinBox="true" caption="2o7c, resolution 1.7&Aring;" /> '''Crystal structure of ...)
Line 4: Line 4:
==Overview==
==Overview==
-
l-Methionine gamma-lyase (EC 4.4.1.11, MGL_Pp) from Pseudomonas putida is, a multifunctional enzyme, which belongs to the gamma-family of, pyridoxal-5'-phosphate (PLP) dependent enzymes. In this report, we, demonstrate that the three-dimensional structure of MGL_Pp has been, completely solved by the molecular replacement method to an R-factor of, 20.4% at 1.8 A resolution. Detailed information of the overall structure, of MGL_Pp supplies a clear picture of the substrate- and PLP-binding, pockets. Tyr59 and Arg61 of neighbouring subunits, which are strongly, conserved in other gamma-family enzymes, contact the phosphate group of, PLP. These residues are important as the main anchor within the active, site. Lys240, Asp241 and Arg61 of one partner monomer and Tyr114 and, Cys116 of the other partner monomer form a hydrogen-bond network in the, MGL active site which is specific for MGLs. It is also suggested that, electrostatic interactions at the subunit interface are involved in the, stabilization of the structural conformation. The detailed structure will, facilitate the development of MGL_Pp as an anticancer drug.
+
l-Methionine gamma-lyase (EC 4.4.1.11, MGL_Pp) from Pseudomonas putida is a multifunctional enzyme, which belongs to the gamma-family of pyridoxal-5'-phosphate (PLP) dependent enzymes. In this report, we demonstrate that the three-dimensional structure of MGL_Pp has been completely solved by the molecular replacement method to an R-factor of 20.4% at 1.8 A resolution. Detailed information of the overall structure of MGL_Pp supplies a clear picture of the substrate- and PLP-binding pockets. Tyr59 and Arg61 of neighbouring subunits, which are strongly conserved in other gamma-family enzymes, contact the phosphate group of PLP. These residues are important as the main anchor within the active site. Lys240, Asp241 and Arg61 of one partner monomer and Tyr114 and Cys116 of the other partner monomer form a hydrogen-bond network in the MGL active site which is specific for MGLs. It is also suggested that electrostatic interactions at the subunit interface are involved in the stabilization of the structural conformation. The detailed structure will facilitate the development of MGL_Pp as an anticancer drug.
==About this Structure==
==About this Structure==
Line 10: Line 10:
==Reference==
==Reference==
-
Structure of the antitumour enzyme L-methionine gamma-lyase from Pseudomonas putida at 1.8 A resolution., Kudou D, Misaki S, Yamashita M, Tamura T, Takakura T, Yoshioka T, Yagi S, Hoffman RM, Takimoto A, Esaki N, Inagaki K, J Biochem (Tokyo). 2007 Apr;141(4):535-44. Epub 2007 Feb 8. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17289792 17289792]
+
Structure of the antitumour enzyme L-methionine gamma-lyase from Pseudomonas putida at 1.8 A resolution., Kudou D, Misaki S, Yamashita M, Tamura T, Takakura T, Yoshioka T, Yagi S, Hoffman RM, Takimoto A, Esaki N, Inagaki K, J Biochem. 2007 Apr;141(4):535-44. Epub 2007 Feb 8. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17289792 17289792]
[[Category: Methionine gamma-lyase]]
[[Category: Methionine gamma-lyase]]
[[Category: Pseudomonas putida]]
[[Category: Pseudomonas putida]]
Line 28: Line 28:
[[Category: plp]]
[[Category: plp]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 11:43:11 2008''
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:15:18 2008''

Revision as of 16:15, 21 February 2008

Image:2o7c.jpg

2o7c, resolution 1.7Å

Drag the structure with the mouse to rotate

Crystal structure of L-methionine-lyase from Pseudomonas

Overview

l-Methionine gamma-lyase (EC 4.4.1.11, MGL_Pp) from Pseudomonas putida is a multifunctional enzyme, which belongs to the gamma-family of pyridoxal-5'-phosphate (PLP) dependent enzymes. In this report, we demonstrate that the three-dimensional structure of MGL_Pp has been completely solved by the molecular replacement method to an R-factor of 20.4% at 1.8 A resolution. Detailed information of the overall structure of MGL_Pp supplies a clear picture of the substrate- and PLP-binding pockets. Tyr59 and Arg61 of neighbouring subunits, which are strongly conserved in other gamma-family enzymes, contact the phosphate group of PLP. These residues are important as the main anchor within the active site. Lys240, Asp241 and Arg61 of one partner monomer and Tyr114 and Cys116 of the other partner monomer form a hydrogen-bond network in the MGL active site which is specific for MGLs. It is also suggested that electrostatic interactions at the subunit interface are involved in the stabilization of the structural conformation. The detailed structure will facilitate the development of MGL_Pp as an anticancer drug.

About this Structure

2O7C is a Single protein structure of sequence from Pseudomonas putida with as ligand. Active as Methionine gamma-lyase, with EC number 4.4.1.11 Full crystallographic information is available from OCA.

Reference

Structure of the antitumour enzyme L-methionine gamma-lyase from Pseudomonas putida at 1.8 A resolution., Kudou D, Misaki S, Yamashita M, Tamura T, Takakura T, Yoshioka T, Yagi S, Hoffman RM, Takimoto A, Esaki N, Inagaki K, J Biochem. 2007 Apr;141(4):535-44. Epub 2007 Feb 8. PMID:17289792

Page seeded by OCA on Thu Feb 21 18:15:18 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2o7c"
Personal tools