User:Wayne Decatur/4ay9 pymol
From Proteopedia
< User:Wayne Decatur(Difference between revisions)
m (→In PyMol) |
m |
||
| (3 intermediate revisions not shown.) | |||
| Line 15: | Line 15: | ||
* [http://pymol.sourceforge.net/newman/user/S0260cartoons.html Pymol Users manual page on secondary structure] | * [http://pymol.sourceforge.net/newman/user/S0260cartoons.html Pymol Users manual page on secondary structure] | ||
'''Bold text''' | '''Bold text''' | ||
| + | |||
| + | |||
| + | |||
| + | test | ||
| + | <Structure load='Insert PDB code or filename here' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' /> | ||
| + | <scene name='55/553104/Test_console/3'>should have four baskets</scene> | ||
| + | |||
| + | <scene name='55/553104/Test_console/4'>also should have four baskets</scene> | ||
Current revision
Making images with 4ay9
In PyMol
I found that for some reason part of the structure that in the paper is represented as a loop, PyMol was making a helix. It was small and not overly noticeable but to perfect images for Stacia's slides. I wanted to deal with it.
select NeedsToBeLoop, chain E and resi 16-17 alter NeedsToBeLoop, ss='L' # assign residues 16-17 of chain E as loop rebuild
Pages with supporting information
- User:Wayne Decatur/Generate Unfolded Structures
- Pymol Posted Command Syntax and Atom Selections for PyMol
- Pymol Posted Command Syntax and Atom Selections for PyMol with 'resi' used
- Pymol Users manual page on secondary structure
Bold text
test
|
