This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gm8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3gm8" [edit=sysop:move=sysop])
Line 1: Line 1:
-
[[Image:3gm8.png|left|200px]]
+
==Crystal structure of a beta-glycosidase from Bacteroides vulgatus==
-
 
+
<StructureSection load='3gm8' size='340' side='right' caption='[[3gm8]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
{{STRUCTURE_3gm8| PDB=3gm8 | SCENE= }}
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3gm8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_vulgatus Bacteroides vulgatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GM8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GM8 FirstGlance]. <br>
-
===Crystal structure of a beta-glycosidase from Bacteroides vulgatus===
+
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>
-
 
+
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BVU_0391 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=821 Bacteroides vulgatus])</td></tr>
-
 
+
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gm8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gm8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gm8 RCSB], [http://www.ebi.ac.uk/pdbsum/3gm8 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3gm8 TOPSAN]</span></td></tr>
-
==About this Structure==
+
<table>
-
[[3gm8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_vulgatus Bacteroides vulgatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GM8 OCA].
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gm/3gm8_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Bacteroides vulgatus]]
[[Category: Bacteroides vulgatus]]
[[Category: Almo, S C.]]
[[Category: Almo, S C.]]

Revision as of 13:06, 29 September 2014

Crystal structure of a beta-glycosidase from Bacteroides vulgatus

3gm8, resolution 2.40Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3gm8"
Views
Personal tools
Navigation
Toolbox