This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qyt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2qyt" [edit=sysop:move=sysop])
Line 1: Line 1:
-
[[Image:2qyt.png|left|200px]]
+
==Crystal structure of 2-dehydropantoate 2-reductase from Porphyromonas gingivalis W83==
-
 
+
<StructureSection load='2qyt' size='340' side='right' caption='[[2qyt]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
{{STRUCTURE_2qyt| PDB=2qyt | SCENE= }}
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2qyt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QYT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2QYT FirstGlance]. <br>
-
===Crystal structure of 2-dehydropantoate 2-reductase from Porphyromonas gingivalis W83===
+
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-
 
+
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
 
+
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">panE, PG_2205 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 Porphyromonas gingivalis])</td></tr>
-
==About this Structure==
+
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qyt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2qyt RCSB], [http://www.ebi.ac.uk/pdbsum/2qyt PDBsum], [http://www.topsan.org/Proteins/MCSG/2qyt TOPSAN]</span></td></tr>
-
[[2qyt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QYT OCA].
+
<table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qy/2qyt_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Porphyromonas gingivalis]]
[[Category: Porphyromonas gingivalis]]
[[Category: Joachimiak, A.]]
[[Category: Joachimiak, A.]]

Revision as of 18:43, 30 September 2014

Crystal structure of 2-dehydropantoate 2-reductase from Porphyromonas gingivalis W83

2qyt, resolution 2.15Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2qyt"
Views
Personal tools
Navigation
Toolbox