This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3clw
From Proteopedia
m (Protected "3clw" [edit=sysop:move=sysop]) |
|||
| Line 1: | Line 1: | ||
| - | + | ==Crystal structure of conserved exported protein from Bacteroides fragilis== | |
| - | + | <StructureSection load='3clw' size='340' side='right' caption='[[3clw]], [[Resolution|resolution]] 2.20Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3clw]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_fragilis_nctc_9343 Bacteroides fragilis nctc 9343]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CLW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CLW FirstGlance]. <br> | |
| - | + | </td></tr><tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BF1510 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272559 Bacteroides fragilis NCTC 9343])</td></tr> | |
| - | + | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3clw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3clw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3clw RCSB], [http://www.ebi.ac.uk/pdbsum/3clw PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3clw TOPSAN]</span></td></tr> | |
| - | + | <table> | |
| - | == | + | == Evolutionary Conservation == |
| - | [[3clw]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_fragilis_nctc_9343 Bacteroides fragilis nctc 9343]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CLW OCA]. | + | [[Image:Consurf_key_small.gif|200px|right]] |
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cl/3clw_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Bacteroides fragilis nctc 9343]] | [[Category: Bacteroides fragilis nctc 9343]] | ||
[[Category: Almo, S C.]] | [[Category: Almo, S C.]] | ||
Revision as of 21:24, 2 October 2014
Crystal structure of conserved exported protein from Bacteroides fragilis
| |||||||||||
Categories: Bacteroides fragilis nctc 9343 | Almo, S C. | Bain, K T. | Bonanno, J B. | Burley, S K. | Chang, S. | NYSGXRC, New York SGX Research Center for Structural Genomics. | Ozyurt, K. | Rutter, M. | Sauder, J M. | Smith, D. | Wasserman, S. | New york sgx research center for structural genomic | Nysgxrc | Protein structure initiative | Psi-2 | Structural genomic | Unknown function

