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Sandbox intro

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==Basic Structural Principles==
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{{#tree:id=siteTree|openlevel=1|
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* [[Introduction to protein structure]]
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* [[The Building Blocks]]
* [[The Building Blocks]]
** [[Amino Acids]]
** [[Amino Acids]]
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:: [[Peptide]]
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** [[Peptide]]
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:: [[Phi and Psi Angles]]
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*** [[User:Stephen Mills/Peptide tutorial 1|Peptide tutorial 1 part 1]]
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:: [[Ramachandran Plots]]
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*** [[User:Stephen Mills/Peptide tutorial 2|Peptide tutorial 1 part 2]]
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** [[Phi and Psi Angles]]
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** [[Ramachandran Plots]]
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: [[Secondary structure]]
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* [[Secondary structure]]
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:: [[Sheets in Proteins]]
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** [[Helices in Proteins]]
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:: [[Helices in Proteins]]
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*** [[User:Stephen Mills/Secondary Structure: Helices|Secondary Structure tutorial - Helices]]
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** [[Sheets in Proteins]]
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*** [[User:Stephen Mills/Secondary Structure: Sheets|Secondary Structure tutorial - Sheets]]
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: [[Structural_templates]]
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* [[Structural_templates]]
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: [[Globular_Proteins]]
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** [[Globular_Proteins]]
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:: [[Turns in Proteins]]
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*** [[Turns in Proteins]]
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: [[Fibrous Proteins]]
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** [[Fibrous Proteins]]
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:: [[Coiled_coil]]
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*** [[Coiled_coil]]
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:: [[Collagen]] - Illustrates the structure of a collagen segment as well as the structure of a mutated tropocollagen.
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*** [[Collagen]] - Illustrates the structure of a collagen segment as well as the structure of a mutated tropocollagen.
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:: [[Fibroins]]
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*** [[Fibroins]]
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: [[Unusual Motifs in Proteins]]
 
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:: [[Cation-pi_interactions]]
 
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:: [[Thermal_motion_of_peptide]]
 
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: [[Intrinsically Disordered Protein]]
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* [[Unusual Motifs in Proteins]]
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** [[Cation-pi_interactions]]
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** [[Thermal_motion_of_peptide]]
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: [[Calculate structure]] - Description of the Jmol command that can be used to highlight helices, sheets and turns of protein structure.
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* [[Intrinsically Disordered Protein]]
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}}
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