This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3l8c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3l8c" [edit=sysop:move=sysop])
Line 1: Line 1:
-
{{STRUCTURE_3l8c| PDB=3l8c | SCENE= }}
+
==Structure of probable D-alanine--poly(phosphoribitol) ligase subunit-1 from Streptococcus pyogenes==
-
===Structure of probable D-alanine--poly(phosphoribitol) ligase subunit-1 from Streptococcus pyogenes===
+
<StructureSection load='3l8c' size='340' side='right' caption='[[3l8c]], [[Resolution|resolution]] 2.41&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==Function==
+
<table><tr><td colspan='2'>[[3l8c]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pyogenes_serotype_m6 Streptococcus pyogenes serotype m6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L8C FirstGlance]. <br>
-
[[http://www.uniprot.org/uniprot/DLTA_STRP6 DLTA_STRP6]] Involved in the biosynthesis of D-alanyl-lipoteichoic acid (LTA). Catalyzes an ATP-dependent two-step reaction where it forms a high energy D-alanyl AMP intermediate and transfers the alanyl residues from AMP to Dcp (By similarity).
+
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dltA, M6_Spy1043 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=301450 Streptococcus pyogenes serotype M6])</td></tr>
-
 
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--poly(phosphoribitol)_ligase D-alanine--poly(phosphoribitol) ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.13 6.1.1.13] </span></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l8c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l8c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l8c RCSB], [http://www.ebi.ac.uk/pdbsum/3l8c PDBsum]</span></td></tr>
-
[[3l8c]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pyogenes_serotype_m6 Streptococcus pyogenes serotype m6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L8C OCA].
+
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l8/3l8c_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Streptococcus pyogenes serotype m6]]
[[Category: Streptococcus pyogenes serotype m6]]
-
[[Category: Almo, S C.]]
 
-
[[Category: Burley, S K.]]
 
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
 
-
[[Category: Ramagopal, U A.]]
 
-
[[Category: Toro, R.]]
 
-
[[Category: Atp-binding]]
 
[[Category: Dlta]]
[[Category: Dlta]]
-
[[Category: Ligase]]
 
-
[[Category: New york sgx research center for structural genomic]]
 
-
[[Category: Nucleotide-binding]]
 
-
[[Category: Nysgxrc]]
 
-
[[Category: Protein structure initiative]]
 
-
[[Category: Psi-2]]
 
-
[[Category: Structural genomic]]
 

Revision as of 12:00, 6 November 2014

Structure of probable D-alanine--poly(phosphoribitol) ligase subunit-1 from Streptococcus pyogenes

3l8c, resolution 2.41Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools