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3loc
From Proteopedia
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| - | + | ==Crystal structure of putative transcriptional regulator ycdc== | |
| - | + | <StructureSection load='3loc' size='340' side='right' caption='[[3loc]], [[Resolution|resolution]] 2.50Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[3loc]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1pb6 1pb6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LOC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LOC FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=URA:URACIL'>URA</scene></td></tr> |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | == | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b1013, JW0998, rutR, ycdC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr> |
| - | [[3loc]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1pb6 1pb6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LOC OCA]. | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3loc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3loc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3loc RCSB], [http://www.ebi.ac.uk/pdbsum/3loc PDBsum]</span></td></tr> |
| - | + | </table> | |
| - | == | + | == Evolutionary Conservation == |
| - | < | + | [[Image:Consurf_key_small.gif|200px|right]] |
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lo/3loc_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
| - | [[Category: Almo, S C | + | [[Category: Almo, S C]] |
| - | [[Category: Burley, S K | + | [[Category: Burley, S K]] |
| - | [[Category: Knapik, A A | + | [[Category: Knapik, A A]] |
| - | [[Category: Mennella, V | + | [[Category: Mennella, V]] |
| - | [[Category: Minor, W | + | [[Category: Minor, W]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Patskovsky, Y V | + | [[Category: Patskovsky, Y V]] |
[[Category: Dimer]] | [[Category: Dimer]] | ||
[[Category: Dna-binding]] | [[Category: Dna-binding]] | ||
[[Category: Helix-turn-helix]] | [[Category: Helix-turn-helix]] | ||
| - | [[Category: New | + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] |
| - | + | [[Category: PSI, Protein structure initiative]] | |
| - | [[Category: Protein structure initiative | + | |
| - | + | ||
[[Category: Putative transcriptional regulator]] | [[Category: Putative transcriptional regulator]] | ||
[[Category: Repressor]] | [[Category: Repressor]] | ||
| - | [[Category: Structural genomic]] | ||
[[Category: Transcription]] | [[Category: Transcription]] | ||
[[Category: Transcription regulation]] | [[Category: Transcription regulation]] | ||
[[Category: Uracil]] | [[Category: Uracil]] | ||
Revision as of 12:53, 6 November 2014
Crystal structure of putative transcriptional regulator ycdc
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Categories: Escherichia coli | Almo, S C | Burley, S K | Knapik, A A | Mennella, V | Minor, W | Structural genomic | Patskovsky, Y V | Dimer | Dna-binding | Helix-turn-helix | NYSGXRC, New York SGX Research Center for Structural Genomics | PSI, Protein structure initiative | Putative transcriptional regulator | Repressor | Transcription | Transcription regulation | Uracil
