Dioxygenase

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{{#tree:id=OrganizedByTopic|openlevels=0|
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===''Dioxygenase Intradiol family''===
+
*'''Dioxygenase Intradiol family'''
-
[[2pcd]] – PpPCD α,β + Fe+3 – ''Pseudomonas putida''<br />
+
**[[2pcd]] – PpPCD α,β + Fe+3 – ''Pseudomonas putida''<br />
-
[[3pcd]], [[1ykk]], [[1ykm]], [[1yko]], [[3lkt]], [[3mfl]], [[3mi1]], [[3mv4]], [[3t63]] – PpPCD α,β (mutant) + Fe+3 <br />
+
**[[3pcd]], [[1ykk]], [[1ykm]], [[1yko]], [[3lkt]], [[3mfl]], [[3mi1]], [[3mv4]], [[3t63]] – PpPCD α,β (mutant) + Fe+3 <br />
-
[[1eo2]], [[1eo9]], [[1eoa]], [[2bum]], [[2but]] – AcPCD α,β + Fe+3 - ''Acinetobacter''<br />
+
**[[1eo2]], [[1eo9]], [[1eoa]], [[2bum]], [[2but]] – AcPCD α,β + Fe+3 - ''Acinetobacter''<br />
-
[[2bux]] – AcPCD α,β (mutant) + Fe+3 <br />
+
**[[2bux]] – AcPCD α,β (mutant) + Fe+3 <br />
-
''PCD complex with aromatic compound''
+
*''PCD complex with aromatic compound''
-
[[3pcf]], [[3pch]], [[3pci]] – PpPCD α,β + Fe+3 + HB derivative<br />
+
**[[3pcf]], [[3pch]], [[3pci]] – PpPCD α,β + Fe+3 + HB derivative<br />
-
[[3pca]], [[3pcb]], [[3pcc]] – PpPCD α,β + Fe+3 + HB <br />
+
**[[3pca]], [[3pcb]], [[3pcc]] – PpPCD α,β + Fe+3 + HB <br />
-
[[1ykl]], [[1ykn]], [[1ykp]], [[3lmx]], [[3mv6]] – PpPCD α,β (mutant) + Fe+3 + DHB<br />
+
**[[1ykl]], [[1ykn]], [[1ykp]], [[3lmx]], [[3mv6]] – PpPCD α,β (mutant) + Fe+3 + DHB<br />
-
[[3pcj]], [[3pck]], [[3pcl]], [[3pcm]] – PpPCD α,β + Fe+3 + hydroxynicotinic acid derivative<br />
+
**[[3pcj]], [[3pck]], [[3pcl]], [[3pcm]] – PpPCD α,β + Fe+3 + hydroxynicotinic acid derivative<br />
-
[[3pcn]], [[3pce]], [[3pcg]] – PpPCD α,β + Fe+3 + hydroxyphenyl acetate derivative<br />
+
**[[3pcn]], [[3pce]], [[3pcg]] – PpPCD α,β + Fe+3 + hydroxyphenyl acetate derivative<br />
-
[[1eob]] – AcPCD α,β + Fe+3 + DHB <br />
+
**[[1eob]] – AcPCD α,β + Fe+3 + DHB <br />
-
[[2buv]], [[2bv0]] – AcPCD α,β (mutant) + Fe+3 + DHB <br />
+
**[[2buv]], [[2bv0]] – AcPCD α,β (mutant) + Fe+3 + DHB <br />
-
[[2bur]] – AcPCD α,β + Fe+3 + HB <br />
+
**[[2bur]] – AcPCD α,β + Fe+3 + HB <br />
-
[[2buw]] – AcPCD α,β (mutant) + Fe+3 + HB <br />
+
**[[2buw]] – AcPCD α,β (mutant) + Fe+3 + HB <br />
-
[[1eoc]], [[2buq]] – AcPCD α,β + Fe+3 + catechol derivative<br />
+
**[[1eoc]], [[2buq]] – AcPCD α,β + Fe+3 + catechol derivative<br />
-
[[2buu]], [[2buy]], [[2buz]] – AcPCD α,β (mutant) + Fe+3 + catechol derivative<br />
+
**[[2buu]], [[2buy]], [[2buz]] – AcPCD α,β (mutant) + Fe+3 + catechol derivative<br />
-
[[3lxv]], [[3mi5]], [[3t67]] – PpPCD α,β (mutant) + Fe+3 + catechol derivative<br />
+
**[[3lxv]], [[3mi5]], [[3t67]] – PpPCD α,β (mutant) + Fe+3 + catechol derivative<br />
-
===Protocatechuate 4,5-dioxygenase (PCD)===
+
*Protocatechuate 4,5-dioxygenase (PCD)
-
[[1b4u]] – SpPCD α,β + Fe+3 + DHB – ''Sphingomonas paucimobilis''<br />
+
**[[1b4u]] – SpPCD α,β + Fe+3 + DHB – ''Sphingomonas paucimobilis''<br />
-
[[1bou]] – SpPCD α,β + Fe+3 <br />
+
**[[1bou]] – SpPCD α,β + Fe+3 <br />
-
===Catechol 1,2-dioxygenase (CTD)===
+
*Catechol 1,2-dioxygenase (CTD)
-
[[1dlm]], [[1dlq]] – AcCTD + Fe+3 <br />
+
**[[1dlm]], [[1dlq]] – AcCTD + Fe+3 <br />
-
[[2azq]] – PpCTD + Fe+3 <br />
+
**[[2azq]] – PpCTD + Fe+3 <br />
-
''CTD complex with aromatic compound''
+
*''CTD complex with aromatic compound''
-
[[1dlt]], [[1dmh]] – AcCTD + Fe+3 + catechol derivative<br />
+
**[[1dlt]], [[1dmh]] – AcCTD + Fe+3 + catechol derivative<br />
-
[[3hgi]] – RoCTD + Fe+3 + benzoic acid <br />
+
**[[3hgi]] – RoCTD + Fe+3 + benzoic acid <br />
-
[[3hhy]], [[3hkp]] – RoCTD + Fe+3 + DHB<br />
+
**[[3hhy]], [[3hkp]] – RoCTD + Fe+3 + DHB<br />
-
[[3hj8]], [[3hjq]], [[3hjs]], [[3i4v]], [[3i4y]], [[3i51]] – RoCTD + Fe+3 + catechol derivative<br />
+
**[[3hj8]], [[3hjq]], [[3hjs]], [[3i4v]], [[3i4y]], [[3i51]] – RoCTD + Fe+3 + catechol derivative<br />
-
[[3hhx]] – RoCTD + Fe+3 + pyrogallol<br />
+
**[[3hhx]] – RoCTD + Fe+3 + pyrogallol<br />
-
[[2xsu]] – ArCTD + Fe+3 + phosphoinositol derivative – ''Acinetobacter radioresistens''<br />
+
**[[2xsu]] – ArCTD + Fe+3 + phosphoinositol derivative – ''Acinetobacter radioresistens''<br />
-
[[2xsv]], [[2xsr]] – ArCTD + Fe+3 + phosphoinositol derivative <br />
+
**[[2xsv]], [[2xsr]] – ArCTD + Fe+3 + phosphoinositol derivative <br />
-
===Chlorocatechol 1,2-dioxygenase (CCTD)===
+
*Chlorocatechol 1,2-dioxygenase (CCTD)
-
[[3th1]] – PpCCTD + Fe+3 <br />
+
**[[3th1]] – PpCCTD + Fe+3 <br />
-
[[1s9a]] – RoCCTD + Fe+3 <br />
+
**[[1s9a]] – RoCCTD + Fe+3 <br />
-
[[3o32]], [[3o5u]] – RoCCTD + Fe+3 + dichlorocatechol derivative<br />
+
**[[3o32]], [[3o5u]] – RoCCTD + Fe+3 + dichlorocatechol derivative<br />
-
[[3o6j]] – RoCCTD + Fe+3 + hydroxyquinol<br />
+
**[[3o6j]] – RoCCTD + Fe+3 + hydroxyquinol<br />
-
[[3o6r]] – RoCCTD + Fe+3 + pyrogallol<br />
+
**[[3o6r]] – RoCCTD + Fe+3 + pyrogallol<br />
-
[[2boy]] – RoCCTD + Fe+3 + benzhydroxamate<br />
+
**[[2boy]] – RoCCTD + Fe+3 + benzhydroxamate<br />
-
===Catechol 2,3-dioxygenase (CTD)===
+
*Catechol 2,3-dioxygenase (CTD)
-
[[2wl3]], [[2wl9]] - RoCTD + Fe+3 - ''Rhodococcus opacus'' <br />
+
**[[2wl3]], [[2wl9]] - RoCTD + Fe+3 - ''Rhodococcus opacus'' <br />
-
[[3lm4]] – RoCTD + Fe+3 + H2O2<br />
+
**[[3lm4]] – RoCTD + Fe+3 + H2O2<br />
-
===Hydroxyquinol 1,2-dioxygenase (HQD)===
+
*Hydroxyquinol 1,2-dioxygenase (HQD)
-
[[1tmx]] – PpHQD + Fe+3 – ''Pimelobacter simplex''<br />
+
**[[1tmx]] – PpHQD + Fe+3 – ''Pimelobacter simplex''<br />
-
===Nitrobenzene dioxygenase (NBDO)===
+
*Nitrobenzene dioxygenase (NBDO)
-
[[2bmo]] – CtNBDO + Fe+3 + Fe2S2 <br />
+
**[[2bmo]] – CtNBDO + Fe+3 + Fe2S2 <br />
-
[[2bmq]] – CtNBDO + Fe+3 + Fe2S2 + nitrobenzene<br />
+
**[[2bmq]] – CtNBDO + Fe+3 + Fe2S2 + nitrobenzene<br />
-
[[2bmr]] – CtNBDO + Fe+3 + Fe2S2 + nitrotoluene<br />
+
**[[2bmr]] – CtNBDO + Fe+3 + Fe2S2 + nitrotoluene<br />
-
===α-ketoglutarate-dependent dioxygenase (Alkb)===
+
*α-ketoglutarate-dependent dioxygenase (Alkb)
-
[[3t4h]], [[3t4v]], [[3t3y]] – EcAlkb + Fe+3 + inhibitor – ''Escherichia coli''<br />
+
**[[3t4h]], [[3t4v]], [[3t3y]] – EcAlkb + Fe+3 + inhibitor – ''Escherichia coli''<br />
-
[[2fdj]], [[2fdg]] – EcAlkb + Mn+2 + succinate <br />
+
**[[2fdj]], [[2fdg]] – EcAlkb + Mn+2 + succinate <br />
-
[[4jht]] – EcAlkb + Mn+2 + qinoline derivative <br />
+
**[[4jht]] – EcAlkb + Mn+2 + qinoline derivative <br />
-
[[2fdf]] – EcAlkb (mutant) + Co+2 + oxoglutarate <br />
+
**[[2fdf]] – EcAlkb (mutant) + Co+2 + oxoglutarate <br />
-
[[2fd8]] – EcAlkb (mutant) + Fe+2 + oxoglutarate <br />
+
**[[2fd8]] – EcAlkb (mutant) + Fe+2 + oxoglutarate <br />
-
[[3khb]] – hAlkb (mutant) + Co+2 + oxoglutarate <br />
+
**[[3khb]] – hAlkb (mutant) + Co+2 + oxoglutarate <br />
-
[[3i3q]] – hAlkb + Mn+2 + oxoglutarate <br />
+
**[[3i3q]] – hAlkb + Mn+2 + oxoglutarate <br />
-
[[3thp]] – hAlkb + Mn+2 + Zn+2 + oxoglutarate <br />
+
**[[3thp]] – hAlkb + Mn+2 + Zn+2 + oxoglutarate <br />
-
[[3tht]] – hAlkb (mutant) + Mn+2 + Zn+2 + oxoglutarate <br />
+
**[[3tht]] – hAlkb (mutant) + Mn+2 + Zn+2 + oxoglutarate <br />
-
[[4idz]] – hFto + Ni+2 + oxalylglycine<br />
+
**[[4idz]] – hFto + Ni+2 + oxalylglycine<br />
-
[[4ie0]], [[4ie5]] – hFto + Zn+2 + pyrimidine derivative<br />
+
**[[4ie0]], [[4ie5]] – hFto + Zn+2 + pyrimidine derivative<br />
-
[[4ie4]], [[4ie6]] – hFto + Zn+2 + quinoline derivative<br />
+
**[[4ie4]], [[4ie6]] – hFto + Zn+2 + quinoline derivative<br />
-
[[4ie7]] – hFto + Zn+2 + rhein<br />
+
**[[4ie7]] – hFto + Zn+2 + rhein<br />
-
''Alkb complex with DNA''
+
*''Alkb complex with DNA''
-
[[3rzm]], [[3rzl]], [[3rzh]], [[3rzg]], [[3btz]] – hAlkb (mutant) + DNA<br />
+
**[[3rzm]], [[3rzl]], [[3rzh]], [[3rzg]], [[3btz]] – hAlkb (mutant) + DNA<br />
-
[[3h8x]], [[3h8r]], [[3h8o]], [[3bty]] – hAlkb (mutant) + DNA + inhibitor<br />
+
**[[3h8x]], [[3h8r]], [[3h8o]], [[3bty]] – hAlkb (mutant) + DNA + inhibitor<br />
-
[[3btx]] – hAlkb (mutant) + Mg+2 + DNA <br />
+
**[[3btx]] – hAlkb (mutant) + Mg+2 + DNA <br />
-
[[3i49]], [[3i2o]] – hAlkb + Fe+2 + oxoglutarate + DNA <br />
+
**[[3i49]], [[3i2o]] – hAlkb + Fe+2 + oxoglutarate + DNA <br />
-
[[3i3m]] – hAlkb + Mn+2 + oxoglutarate + DNA<br />
+
**[[3i3m]] – hAlkb + Mn+2 + oxoglutarate + DNA<br />
-
[[3s5a]], [[3s57]], [[3rzk]], [[3rzj]], [[3buc]], [[3bu0]], [[3bkz]] – hAlkb (mutant) + Mn+2 + oxoglutarate + DNA<br />
+
**[[3s5a]], [[3s57]], [[3rzk]], [[3rzj]], [[3buc]], [[3bu0]], [[3bkz]] – hAlkb (mutant) + Mn+2 + oxoglutarate + DNA<br />
-
[[3o1r]], [[3o1p]], [[3o1o]], [[3o1m]] – hAlkb (mutant) + Mn+2 + oxoglutarate + DNA + inhibitor<br />
+
**[[3o1r]], [[3o1p]], [[3o1o]], [[3o1m]] – hAlkb (mutant) + Mn+2 + oxoglutarate + DNA + inhibitor<br />
-
[[3bie]], [[3bi3]], [[2fdh]] – EcAlkb (mutant) + Mn+2 + oxoglutarate + DNA + inhibitor<br />
+
**[[3bie]], [[3bi3]], [[2fdh]] – EcAlkb (mutant) + Mn+2 + oxoglutarate + DNA + inhibitor<br />
-
[[2fdi]] – EcAlkb + Fe+2 + oxoglutarate + DNA + inhibitor<br />
+
**[[2fdi]] – EcAlkb + Fe+2 + oxoglutarate + DNA + inhibitor<br />
-
[[3khc]] – hAlkb (mutant) + Co+2 + oxoglutarate + DNA + inhibitor<br />
+
**[[3khc]] – hAlkb (mutant) + Co+2 + oxoglutarate + DNA + inhibitor<br />
-
[[3o1v]], [[3o1u]], [[3o1t]], [[3t1s]] – hAlkb (mutant) + Fe+3 + succinate + DNA + inhibitor<br />
+
**[[3o1v]], [[3o1u]], [[3o1t]], [[3t1s]] – hAlkb (mutant) + Fe+3 + succinate + DNA + inhibitor<br />
-
===Dioxygenase extradiol family===
+
'''Dioxygenase extradiol family'''
-
===Homoprotocatechuate 2,3-dioxygenase (HPCD)===
+
*Homoprotocatechuate 2,3-dioxygenase (HPCD)
-
[[1f1r]], [[1f1u]] – AgHPCD + Mn+2 – ''Arthrobacter globiformis''<br />
+
**[[1f1r]], [[1f1u]] – AgHPCD + Mn+2 – ''Arthrobacter globiformis''<br />
-
[[1f1x]], [[1q0o]] – BfHPCD + Fe+3 – ''Brevibacterium fuscum''<br />
+
**[[1f1x]], [[1q0o]] – BfHPCD + Fe+3 – ''Brevibacterium fuscum''<br />
-
[[2ig9]], [[3ojt]] – BfHPCD + Fe+2<br />
+
**[[2ig9]], [[3ojt]] – BfHPCD + Fe+2<br />
-
[[3ecj]], [[4ghc]] – BfHPCD (mutant) + Fe+2<br />
+
**[[3ecj]], [[4ghc]] – BfHPCD (mutant) + Fe+2<br />
-
[[3bza]], [[3ojn]] – BfHPCD + Mn+2<br />
+
**[[3bza]], [[3ojn]] – BfHPCD + Mn+2<br />
-
[[3ojj]] – BfHPCD + MCo+2<br />
+
**[[3ojj]] – BfHPCD + MCo+2<br />
-
''HPCD complex with aromatic compound''
+
*''HPCD complex with aromatic compound''
-
[[1f1v]] – AgHPCD + Mn+2 + dihydroxyphenyl acetate <br />
+
**[[1f1v]] – AgHPCD + Mn+2 + dihydroxyphenyl acetate <br />
-
[[1q0c]], [[4ghg]] – BfHPCD + Fe+2 + dihydroxyphenyl acetate <br />
+
**[[1q0c]], [[4ghg]] – BfHPCD + Fe+2 + dihydroxyphenyl acetate <br />
-
[[4ghd]] – BfHPCD (mutant) + Fe+2 + dihydroxyphenyl acetate <br />
+
**[[4ghd]] – BfHPCD (mutant) + Fe+2 + dihydroxyphenyl acetate <br />
-
[[2iga]] – BfHPCD + Fe+2 + O2 + reaction intermediates<br />
+
**[[2iga]] – BfHPCD + Fe+2 + O2 + reaction intermediates<br />
-
[[3eck]] – BfHPCD (mutant) + Fe+2 + reaction intermediates<br />
+
**[[3eck]] – BfHPCD (mutant) + Fe+2 + reaction intermediates<br />
-
[[3ojk]] – BfHPCD + Co+2 + catechol derivative<br />
+
**[[3ojk]] – BfHPCD + Co+2 + catechol derivative<br />
-
[[4ghe]], [[4ghf]] – BfHPCD (mutant) + Fe+2 + catechol derivative<br />
+
**[[4ghe]], [[4ghf]] – BfHPCD (mutant) + Fe+2 + catechol derivative<br />
-
[[4ghh]] – BfHPCD + Fe+2 + catechol derivative<br />
+
**[[4ghh]] – BfHPCD + Fe+2 + catechol derivative<br />
-
===Catechol 2,3-dioxygenase (MPC)===
+
*Catechol 2,3-dioxygenase (MPC)
-
[[1mpy]] – PpMPC + Fe+2 <br />
+
**[[1mpy]] – PpMPC + Fe+2 <br />
-
[[3hpv]] – PsMPC + Fe+2 - ''Pseudomonas''<br />
+
**[[3hpv]] – PsMPC + Fe+2 - ''Pseudomonas''<br />
-
[[3hpy]] – PsMPC + Fe+2 + catechol derivative<br />
+
**[[3hpy]] – PsMPC + Fe+2 + catechol derivative<br />
-
[[3hq0]] – PsMPC + Fe+3 + product<br />
+
**[[3hq0]] – PsMPC + Fe+3 + product<br />
-
===Naphthalene 1,2-dioxygenase (NDO)===
+
*Naphthalene 1,2-dioxygenase (NDO)
-
[[1ndo]], [[1o7h]], [[1o7w]] – PpNDO + Fe+3 + Fe2S2<br />
+
**[[1ndo]], [[1o7h]], [[1o7w]] – PpNDO + Fe+3 + Fe2S2<br />
-
[[2hmj]] – PpNDO (mutant) + Fe+3 + Fe2S2 <br />
+
**[[2hmj]] – PpNDO (mutant) + Fe+3 + Fe2S2 <br />
-
[[2b1x]] – RoNDO + Fe+3 + Fe2S2<br />
+
**[[2b1x]] – RoNDO + Fe+3 + Fe2S2<br />
-
''NDO complex with aromatic compound''
+
*''NDO complex with aromatic compound''
-
[[1eg9]] – PpNDO + Fe+3 + Fe2S2 + indole<br />
+
**[[1eg9]] – PpNDO + Fe+3 + Fe2S2 + indole<br />
-
[[1o7g]] – PpNDO + Fe+3 + Fe2S2 + naphthalene<br />
+
**[[1o7g]] – PpNDO + Fe+3 + Fe2S2 + naphthalene<br />
-
[[1o7m]] – PpNDO + Fe+3 + Fe2S2 + O2<br />
+
**[[1o7m]] – PpNDO + Fe+3 + Fe2S2 + O2<br />
-
[[1o7n]] – PpNDO + Fe+3 + Fe2S2 + O2 + indole<br />
+
**[[1o7n]] – PpNDO + Fe+3 + Fe2S2 + O2 + indole<br />
-
[[1o7p]] – PpNDO + Fe+3 + Fe2S2 + dihydronaphthalene<br />
+
**[[1o7p]] – PpNDO + Fe+3 + Fe2S2 + dihydronaphthalene<br />
-
[[1uuv]], [[1uuw]] – PpNDO + Fe+3 + Fe2S2 + NO3<br />
+
**[[1uuv]], [[1uuw]] – PpNDO + Fe+3 + Fe2S2 + NO3<br />
-
[[2hmk]], [[2hml]] – PpNDO (mutant) + Fe+3 + Fe2S2 + phenanthrene<br />
+
**[[2hmk]], [[2hml]] – PpNDO (mutant) + Fe+3 + Fe2S2 + phenanthrene<br />
-
[[2hmm]], [[2hmn]] – PpNDO (mutant) + Fe+3 + Fe2S2 + anthracene<br />
+
**[[2hmm]], [[2hmn]] – PpNDO (mutant) + Fe+3 + Fe2S2 + anthracene<br />
-
[[2hmo]] – PpNDO + Fe+3 + Fe2S2 + nitrotoluene<br />
+
**[[2hmo]] – PpNDO + Fe+3 + Fe2S2 + nitrotoluene<br />
-
[[2b24]] – RoNDO + Fe+3 + Fe2S2 + indole<br />
+
**[[2b24]] – RoNDO + Fe+3 + Fe2S2 + indole<br />
-
[[4hm0]], [[4hm1]], [[4hm4]], [[4hm5]] – PsNDO + Fe+3 + Fe2S2 + indole derivative<br />
+
**[[4hm0]], [[4hm1]], [[4hm4]], [[4hm5]] – PsNDO + Fe+3 + Fe2S2 + indole derivative<br />
-
[[4hm2]], [[4hm3]], [[4hm6]], [[4hm7]], [[4hm8]] – PsNDO + Fe+3 + Fe2S2 + phenyl derivative<br />
+
**[[4hm2]], [[4hm3]], [[4hm6]], [[4hm7]], [[4hm8]] – PsNDO + Fe+3 + Fe2S2 + phenyl derivative<br />
-
[[4hjl]] – PsNDO + Fe+3 + Fe2S2 + chloronaphthalene<br />
+
**[[4hjl]] – PsNDO + Fe+3 + Fe2S2 + chloronaphthalene<br />
-
[[4hkv]] – PsNDO + Fe+3 + Fe2S2 + benzamide<br />
+
**[[4hkv]] – PsNDO + Fe+3 + Fe2S2 + benzamide<br />
-
===Dihydronaphthalene 1,2-dioxygenase (HNDO)===
+
*Dihydronaphthalene 1,2-dioxygenase (HNDO)
-
[[2ehz]], [[2ei2]] – PsHNDO + Fe+2 <br />
+
**[[2ehz]], [[2ei2]] – PsHNDO + Fe+2 <br />
-
[[2ei0]], [[2ei1]], [[2ei3]] – PsHNDO + Fe+2 + dihydroxybephenyl<br />
+
**[[2ei0]], [[2ei1]], [[2ei3]] – PsHNDO + Fe+2 + dihydroxybephenyl<br />
-
===2,3-dihydroxybiphenyl 1,2-dioxygenase (DHBP)===
+
*2,3-dihydroxybiphenyl 1,2-dioxygenase (DHBP)
-
[[1dhy]], [[1eil]], [[1eiq]], [[1eir]] – PsDHBP + Fe+3 <br />
+
**[[1dhy]], [[1eil]], [[1eiq]], [[1eir]] – PsDHBP + Fe+3 <br />
-
[[1kw3]] – PsDHBP + Fe+2 <br />
+
**[[1kw3]] – PsDHBP + Fe+2 <br />
-
[[1kw8]] – PsDHBP + Fe+2 + NO<br />
+
**[[1kw8]] – PsDHBP + Fe+2 + NO<br />
-
[[1kwb]] – PsDHBP (mutant) <br />
+
**[[1kwb]] – PsDHBP (mutant) <br />
-
[[1han]], [[1kmy]] – BxDHBP (mutant) + Fe+3 – ''Burkholderia xenovorans''<br />
+
**[[1han]], [[1kmy]] – BxDHBP (mutant) + Fe+3 – ''Burkholderia xenovorans''<br />
-
''DHBP complex with aromatic compound''
+
*''DHBP complex with aromatic compound''
-
[[1knd]], [[1knf]] – BxDHBP + Fe+3 + catechol derivative<br />
+
**[[1knd]], [[1knf]] – BxDHBP + Fe+3 + catechol derivative<br />
-
[[1lgt]], [[1lkd]] – BxDHBP + Fe+2 + dihydroxybephenyl<br />
+
**[[1lgt]], [[1lkd]] – BxDHBP + Fe+2 + dihydroxybephenyl<br />
-
[[1kw6]], [[1kw9]] – PsDHBP + Fe+2 + dihydroxybephenyl<br />
+
**[[1kw6]], [[1kw9]] – PsDHBP + Fe+2 + dihydroxybephenyl<br />
-
[[1kwc]] – PsDHBP (mutant) + dihydroxybephenyl<br />
+
**[[1kwc]] – PsDHBP (mutant) + dihydroxybephenyl<br />
-
===Salicylate 1,2-dioxygenase (SDO)===
+
*Salicylate 1,2-dioxygenase (SDO)
-
[[2phd]] – PssSDO + Fe+3 – ''Pseudaminobacter salicylatoxidans''<br />
+
**[[2phd]] – PssSDO + Fe+3 – ''Pseudaminobacter salicylatoxidans''<br />
-
[[4fah]], [[4fbf]] – PssSDO (mutant) + Fe+3<br />
+
**[[4fah]], [[4fbf]] – PssSDO (mutant) + Fe+3<br />
-
[[3nst]] – PssSDO (mutant) + Fe+2 <br />
+
**[[3nst]] – PssSDO (mutant) + Fe+2 <br />
-
[[3njz]] – PssSDO + Fe+2 +salicylate<br />
+
**[[3njz]] – PssSDO + Fe+2 +salicylate<br />
-
[[3nvc]] – PssSDO (mutant) + Fe+2 +salicylate<br />
+
**[[3nvc]] – PssSDO (mutant) + Fe+2 +salicylate<br />
-
[[3nkt ]] – PssSDO + Fe+2 +naphthoate<br />
+
**[[3nkt ]] – PssSDO + Fe+2 +naphthoate<br />
-
[[3nl1]] – PssSDO + Fe+2 +gentisate<br />
+
**[[3nl1]] – PssSDO + Fe+2 +gentisate<br />
-
[[3nw4]], [[4fag]] – PssSDO (mutant) + Fe+2 +gentisate<br />
+
**[[3nw4]], [[4fag]] – PssSDO (mutant) + Fe+2 +gentisate<br />
-
===Biphenyl 1,2-dioxygenase (BDO)===
+
*Biphenyl 1,2-dioxygenase (BDO)
-
[[3gzy]] – CtBDO + Fe+2 + Fe2S2 – ''Comamonas testosteroni''<br />
+
**[[3gzy]] – CtBDO + Fe+2 + Fe2S2 – ''Comamonas testosteroni''<br />
-
[[2xr8]] – BxBDO + Fe+2 + Fe2S2 <br />
+
**[[2xr8]] – BxBDO + Fe+2 + Fe2S2 <br />
-
[[2xso]], [[2yfi]] – BxBDO (mutant) + Fe+2 + Fe2S2 <br />
+
**[[2xso]], [[2yfi]] – BxBDO (mutant) + Fe+2 + Fe2S2 <br />
-
[[1uli]] - RoBDO + Fe+2 + Fe2S2 <br />
+
**[[1uli]] - RoBDO + Fe+2 + Fe2S2 <br />
-
[[2gbw]] - SyBDO + Fe+2 + Fe2S2 + O2 – ''Sphingobium yanoikuyae''<br />
+
**[[2gbw]] - SyBDO + Fe+2 + Fe2S2 + O2 – ''Sphingobium yanoikuyae''<br />
-
''BDO complex with aromatic compound''
+
*''BDO complex with aromatic compound''
-
[[3gzx]] – CtBDO + Fe+2 + Fe2S2 + biphenyl <br />
+
**[[3gzx]] – CtBDO + Fe+2 + Fe2S2 + biphenyl <br />
-
[[2xrx]] – BxBDO + Fe+2 + Fe2S2 + biphenyl <br />
+
**[[2xrx]] – BxBDO + Fe+2 + Fe2S2 + biphenyl <br />
-
[[2xsh]] – BxBDO (mutant) + Fe+2 + Fe2S2 + biphenyl <br />
+
**[[2xsh]] – BxBDO (mutant) + Fe+2 + Fe2S2 + biphenyl <br />
-
[[2yfj]], [[2yfl]] – BxBDO (mutant) + Fe+2 + Fe2S2 + dibenzofuran <br />
+
**[[2yfj]], [[2yfl]] – BxBDO (mutant) + Fe+2 + Fe2S2 + dibenzofuran <br />
-
[[1ulj]] - RoBDO + Fe+2 + Fe2S2 + biphenyl <br />
+
**[[1ulj]] - RoBDO + Fe+2 + Fe2S2 + biphenyl <br />
-
[[2gbx]] - SyBDO + Fe+2 + Fe2S2 + biphenyl <br />
+
**[[2gbx]] - SyBDO + Fe+2 + Fe2S2 + biphenyl <br />
-
===Tryptophan 2,3-dioxygenase (TDO)===
+
*Tryptophan 2,3-dioxygenase (TDO)
-
[[1yw0]] – XcTDO + Mg – ''Xanthomonas campestris''<br />
+
**[[1yw0]] – XcTDO + Mg – ''Xanthomonas campestris''<br />
-
[[2nw7]] – XcTDO + heme <br />
+
**[[2nw7]] – XcTDO + heme <br />
-
[[4hka]] – TDO + heme – ''Drosophila melanogaster''<br />
+
**[[4hka]] – TDO + heme – ''Drosophila melanogaster''<br />
-
[[3bk9]], [[3e08]] – XcTDO (mutant) + heme + tryptophan <br />
+
**[[3bk9]], [[3e08]] – XcTDO (mutant) + heme + tryptophan <br />
-
[[2nw8]], [[2nw9]] – XcTDO + heme + Mn + tryptophan derivative<br />
+
**[[2nw8]], [[2nw9]] – XcTDO + heme + Mn + tryptophan derivative<br />
-
[[2nox]] – CmTDO + heme – ''Cupriavidus metallidurans''<br />
+
**[[2nox]] – CmTDO + heme – ''Cupriavidus metallidurans''<br />
-
===Cysteine dioxygenase type I (CysDO)===
+
*Cysteine dioxygenase type I (CysDO)
-
[[2gh2]], [[4ieo]], [[4iep]], [[4ieq]], [[4ier]], [[4ies]], [[4iet]], [[4ieu]], [[4iev]], [[4iew]], [[4iex]], [[4iey]], [[4iez]], [[4jtn]], [[4jto]], [[4kwj]], [[4kwk]], [[4kwl]] – rCysDO + Fe+2 – rat <br />
+
**[[2gh2]], [[4ieo]], [[4iep]], [[4ieq]], [[4ier]], [[4ies]], [[4iet]], [[4ieu]], [[4iev]], [[4iew]], [[4iex]], [[4iey]], [[4iez]], [[4jtn]], [[4jto]], [[4kwj]], [[4kwk]], [[4kwl]] – rCysDO + Fe+2 – rat <br />
-
[[3eln]] – rCysDO + Fe+2 + cysteine derivative<br />
+
**[[3eln]] – rCysDO + Fe+2 + cysteine derivative<br />
-
[[2q4s]] – mCysDO + Ni+2 <br />
+
**[[2q4s]] – mCysDO + Ni+2 <br />
-
[[2ic1]] – hCysDO + Fe+2 + cysteine<br />
+
**[[2ic1]] – hCysDO + Fe+2 + cysteine<br />
-
===4-hydroxyphenylpyruvate dioxygenase (HPPD)===
+
*4-hydroxyphenylpyruvate dioxygenase (HPPD)
-
[[1cjx]] – HPPD + Fe+2 – ''Pseudomonas fluorescens''<br />
+
**[[1cjx]] – HPPD + Fe+2 – ''Pseudomonas fluorescens''<br />
-
[[1t47]] – HPPD + Fe+2 – ''Streptomyces avermitilis''<br />
+
**[[1t47]] – HPPD + Fe+2 – ''Streptomyces avermitilis''<br />
-
[[1sqd]], [[1sp9]] – AtHPPD + Fe+3 – ''Arabidopsis thaliana''<br />
+
**[[1sqd]], [[1sp9]] – AtHPPD + Fe+3 – ''Arabidopsis thaliana''<br />
-
[[1sqi]] – HPPD + Fe+3 + inhibitor - rat<br />
+
**[[1sqi]] – HPPD + Fe+3 + inhibitor - rat<br />
-
[[1tfz]], [[1tg5]] – AtHPPD + Fe+3 + inhibitor <br />
+
**[[1tfz]], [[1tg5]] – AtHPPD + Fe+3 + inhibitor <br />
-
[[3isq]] – hHPPD + Co+2 - human<br />
+
**[[3isq]] – hHPPD + Co+2 - human<br />
-
[[1sp8]] – HPPD + Fe+2 – corn<br />
+
**[[1sp8]] – HPPD + Fe+2 – corn<br />
-
===Quercetin 2,3-dioxygenase (QDO)===
+
*Quercetin 2,3-dioxygenase (QDO)
-
[[1juh]] – AjQDO + Cu+2 – ''Aspergillus japonicus''<br />
+
**[[1juh]] – AjQDO + Cu+2 – ''Aspergillus japonicus''<br />
-
[[2h0v]] – QDO + Fe+3 – ''Bacillus subtilis''<br />
+
**[[2h0v]] – QDO + Fe+3 – ''Bacillus subtilis''<br />
-
[[1gqg]], [[1gqh]] – AjQDO + Cu+2 + inhibitor<br />
+
**[[1gqg]], [[1gqh]] – AjQDO + Cu+2 + inhibitor<br />
-
[[1h1i]] – AjQDO + Cu+2 + quercetin<br />
+
**[[1h1i]] – AjQDO + Cu+2 + quercetin<br />
-
[[1h1m]] – AjQDO + Cu+2 + kaempferol<br />
+
**[[1h1m]] – AjQDO + Cu+2 + kaempferol<br />
-
===Taurine/α-ketoglutarate dioxygenase (TauD)===
+
*Taurine/α-ketoglutarate dioxygenase (TauD)
-
[[1gqw]], [[1gy9]], [[1os7]] – EcTauD + Fe+2 + taurine + oxoglutarate <br />
+
**[[1gqw]], [[1gy9]], [[1os7]] – EcTauD + Fe+2 + taurine + oxoglutarate <br />
-
[[1otj]] – EcTauD + taurine <br />
+
**[[1otj]] – EcTauD + taurine <br />
-
[[3pvj]], [[3v15]] – PpTauD <br />
+
**[[3pvj]], [[3v15]] – PpTauD <br />
-
[[3v17]] – PpTauD + oxoglutarate <br />
+
**[[3v17]] – PpTauD + oxoglutarate <br />
-
[[3r1j]] – HAD + Fe+3 – ''Mycobacterium avium''<br />
+
**[[3r1j]] – HAD + Fe+3 – ''Mycobacterium avium''<br />
-
[[4j5i]] – HAD + Fe+3 – ''Mycobacterium smegmatis''<br />
+
**[[4j5i]] – HAD + Fe+3 – ''Mycobacterium smegmatis''<br />
-
===3-hydroxyanthranilate 3,4-dioxygenase (HAD)===
+
*3-hydroxyanthranilate 3,4-dioxygenase (HAD)
-
[[1yfu]] – CmHAD + Fe+3<br />
+
**[[1yfu]] – CmHAD + Fe+3<br />
-
[[1yfw]] – CmHAD + Fe+3 + O2 + hydroxyanthranilate<br />
+
**[[1yfw]] – CmHAD + Fe+3 + O2 + hydroxyanthranilate<br />
-
[[1yfx]] – CmHAD + Fe+3 + NO + hydroxyanthranilate<br />
+
**[[1yfx]] – CmHAD + Fe+3 + NO + hydroxyanthranilate<br />
-
[[1yfy]] – CmHAD + Fe+3 + hydroxyanthranilate<br />
+
**[[1yfy]] – CmHAD + Fe+3 + hydroxyanthranilate<br />
-
[[1zvf]] – HAD + Ni+2 - yeast<br />
+
**[[1zvf]] – HAD + Ni+2 - yeast<br />
-
[[2qnk]] – hHAD + Ni+2 <br />
+
**[[2qnk]] – hHAD + Ni+2 <br />
-
[[3fe5]] – HAD + Fe+3 - bovine<br />
+
**[[3fe5]] – HAD + Fe+3 - bovine<br />
-
===Carbazole 1,9a-dioxygenase (CDO)===
+
*Carbazole 1,9a-dioxygenase (CDO)
-
[[1vck]] – HAD ferredoxin component + Fe+3 + Fe2S2 – ''Pseudomonas resinovorans''<br />
+
**[[1vck]] – HAD ferredoxin component + Fe+3 + Fe2S2 – ''Pseudomonas resinovorans''<br />
-
[[2de5]], [[2de6]] – JaHAD ferredoxin and terminal oxygenase components + Fe+3 + Fe2S2 – ''Janthinobacterium''<br />
+
**[[2de5]], [[2de6]] – JaHAD ferredoxin and terminal oxygenase components + Fe+3 + Fe2S2 – ''Janthinobacterium''<br />
-
[[2de7]], [[3vmg]] – JaHAD ferredoxin and terminal oxygenase components + Fe+3 + Fe2S2 + carbazole<br />
+
**[[2de7]], [[3vmg]] – JaHAD ferredoxin and terminal oxygenase components + Fe+3 + Fe2S2 + carbazole<br />
-
[[3vmh]] – JaHAD ferredoxin and terminal oxygenase components + Fe+3 + Fe2S2 + O2<br />
+
**[[3vmh]] – JaHAD ferredoxin and terminal oxygenase components + Fe+3 + Fe2S2 + O2<br />
-
[[3vmi]] – JaHAD ferredoxin and terminal oxygenase components + Fe+3 + Fe2S2 + carbazole + O2<br />
+
**[[3vmi]] – JaHAD ferredoxin and terminal oxygenase components + Fe+3 + Fe2S2 + carbazole + O2<br />
-
===Homogentisate 1,2-dioxygenase (HGDO)===
+
*Homogentisate 1,2-dioxygenase (HGDO)
-
[[1ey2]] – hHGDO + Fe+2 <br />
+
**[[1ey2]] – hHGDO + Fe+2 <br />
-
[[1eyb]] – hHGDO <br />
+
**[[1eyb]] – hHGDO <br />
-
[[4aq2]] – PpHGDO + Fe+3 <br />
+
**[[4aq2]] – PpHGDO + Fe+3 <br />
-
[[4aq6]] – PpHGDO + Fe+3 + substrate<br />
+
**[[4aq6]] – PpHGDO + Fe+3 + substrate<br />
-
[[3zds]] – PpHGDO + Fe+3 + O2<br />
+
**[[3zds]] – PpHGDO + Fe+3 + O2<br />
 +
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 08:29, 24 November 2014

Structure of protocatechuate 3,4-dioxygenase with Fe+3 complex with dihydroxybenzoate (PDB entry 1eob)

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Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman, Jaime Prilusky

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