This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ep1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3ep1" [edit=sysop:move=sysop])
Line 1: Line 1:
-
[[Image:3ep1.png|left|200px]]
+
==Structure of the PGRP-Hd from Alvinella pompejana==
-
 
+
<StructureSection load='3ep1' size='340' side='right' caption='[[3ep1]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
{{STRUCTURE_3ep1| PDB=3ep1 | SCENE= }}
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3ep1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Alvinella_pompejana Alvinella pompejana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EP1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EP1 FirstGlance]. <br>
-
===Structure of the PGRP-Hd from Alvinella pompejana===
+
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PGRP-Hd ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6376 Alvinella pompejana])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ep1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ep1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ep1 RCSB], [http://www.ebi.ac.uk/pdbsum/3ep1 PDBsum]</span></td></tr>
-
 
+
</table>
-
==About this Structure==
+
== Evolutionary Conservation ==
-
[[3ep1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Alvinella_pompejana Alvinella pompejana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EP1 OCA].
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Alvinella pompejana]]
+
Check<jmol>
-
[[Category: Delfosse, V.]]
+
<jmolCheckbox>
-
[[Category: Gagniere, N.]]
+
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ep/3ep1_consurf.spt"</scriptWhenChecked>
-
[[Category: Lecompte, O.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Mayer, C.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Perrodou, E.]]
+
</jmolCheckbox>
-
[[Category: Poch, O.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Alvinella pompejana]]
[[Category: Alvinella pompejana]]
 +
[[Category: Delfosse, V]]
 +
[[Category: Gagniere, N]]
 +
[[Category: Lecompte, O]]
 +
[[Category: Mayer, C]]
 +
[[Category: Perrodou, E]]
 +
[[Category: Poch, O]]
[[Category: Immune system]]
[[Category: Immune system]]
[[Category: Model system]]
[[Category: Model system]]
[[Category: Pgrp-hd]]
[[Category: Pgrp-hd]]
[[Category: Thermophile]]
[[Category: Thermophile]]

Revision as of 08:47, 26 November 2014

Structure of the PGRP-Hd from Alvinella pompejana

3ep1, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools