Sandbox chameleon

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Methodology: Design the longest possible sequence that can fold into an alpha-helix when inserted into one place in a protein sequence and a beta-sheet when inserted into another
Methodology: Design the longest possible sequence that can fold into an alpha-helix when inserted into one place in a protein sequence and a beta-sheet when inserted into another
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Two key references to read on this are Chameleon Protein<ref>PMID:8614471</ref> and an analysis of Helix-to-Strand transition between peptides with Identical Sequences<ref>PMID:8614471</ref>.
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Two key references to read on this are Chameleon Protein<ref>PMID:8614471</ref> and an analysis of Helix-to-Strand transition between peptides with Identical Sequences<ref>PMID:10966577 </ref>.
== Function ==
== Function ==

Revision as of 16:10, 30 November 2014

Your Heading Here (maybe something like 'Structure')

2gb1

Drag the structure with the mouse to rotate
are changed to the Chameleon sequence,

i.e. going from:

TTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEK TTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGAWTVEKAFKTFTVTEK


</StructureSection>

References

  1. Minor DL Jr, Kim PS. Context-dependent secondary structure formation of a designed protein sequence. Nature. 1996 Apr 25;380(6576):730-4. PMID:8614471 doi:http://dx.doi.org/10.1038/380730a0
  2. Zhou X, Alber F, Folkers G, Gonnet GH, Chelvanayagam G. An analysis of the helix-to-strand transition between peptides with identical sequence. Proteins. 2000 Nov 1;41(2):248-56. PMID:10966577
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