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1nmp

From Proteopedia

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[[Image:1nmp.jpg|left|200px]]<br /><applet load="1nmp" size="350" color="white" frame="true" align="right" spinBox="true"
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[[Image:1nmp.jpg|left|200px]]
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caption="1nmp, resolution 2.20&Aring;" />
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'''Structural genomics, ybgI protein, unknown function'''<br />
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{{Structure
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|PDB= 1nmp |SIZE=350|CAPTION= <scene name='initialview01'>1nmp</scene>, resolution 2.20&Aring;
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|SITE=
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|LIGAND= <scene name='pdbligand=MG:MAGNESIUM ION'>MG</scene>
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|ACTIVITY=
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|GENE= YBGI OR B0710 OR Z0861 OR ECS0735 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= Escherichia coli, and Escherichia coli O157:H7])
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}}
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'''Structural genomics, ybgI protein, unknown function'''
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==Overview==
==Overview==
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==About this Structure==
==About this Structure==
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1NMP is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli,_and_escherichia_coli_o157:h7 Escherichia coli, and escherichia coli o157:h7] with <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NMP OCA].
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1NMP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli,_and_escherichia_coli_o157:h7 Escherichia coli, and escherichia coli o157:h7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NMP OCA].
==Reference==
==Reference==
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Crystal structure of Escherichia coli protein ybgI, a toroidal structure with a dinuclear metal site., Ladner JE, Obmolova G, Teplyakov A, Howard AJ, Khil PP, Camerini-Otero RD, Gilliland GL, BMC Struct Biol. 2003 Sep 30;3:7. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=14519207 14519207]
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Crystal structure of Escherichia coli protein ybgI, a toroidal structure with a dinuclear metal site., Ladner JE, Obmolova G, Teplyakov A, Howard AJ, Khil PP, Camerini-Otero RD, Gilliland GL, BMC Struct Biol. 2003 Sep 30;3:7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14519207 14519207]
[[Category: Escherichia coli, and escherichia coli o157:h7]]
[[Category: Escherichia coli, and escherichia coli o157:h7]]
[[Category: Single protein]]
[[Category: Single protein]]
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[[Category: hypothetical protein]]
[[Category: hypothetical protein]]
[[Category: s2f]]
[[Category: s2f]]
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[[Category: structural genomics]]
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[[Category: structural genomic]]
[[Category: structure 2 function project]]
[[Category: structure 2 function project]]
[[Category: toroidal structure]]
[[Category: toroidal structure]]
[[Category: ybgi]]
[[Category: ybgi]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 14:07:49 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:58:51 2008''

Revision as of 10:58, 20 March 2008

Image:1nmp.jpg


PDB ID 1nmp

Drag the structure with the mouse to rotate
, resolution 2.20Å
Ligands:
Gene: YBGI OR B0710 OR Z0861 OR ECS0735 (Escherichia coli, and Escherichia coli O157:H7)
Coordinates: save as pdb, mmCIF, xml



Structural genomics, ybgI protein, unknown function


Overview

BACKGROUND: The protein encoded by the gene ybgI was chosen as a target for a structural genomics project emphasizing the relation of protein structure to function. RESULTS: The structure of the ybgI protein is a toroid composed of six polypeptide chains forming a trimer of dimers. Each polypeptide chain binds two metal ions on the inside of the toroid. CONCLUSION: The toroidal structure is comparable to that of some proteins that are involved in DNA metabolism. The di-nuclear metal site could imply that the specific function of this protein is as a hydrolase-oxidase enzyme.

About this Structure

1NMP is a Single protein structure of sequence from Escherichia coli, and escherichia coli o157:h7. Full crystallographic information is available from OCA.

Reference

Crystal structure of Escherichia coli protein ybgI, a toroidal structure with a dinuclear metal site., Ladner JE, Obmolova G, Teplyakov A, Howard AJ, Khil PP, Camerini-Otero RD, Gilliland GL, BMC Struct Biol. 2003 Sep 30;3:7. PMID:14519207

Page seeded by OCA on Thu Mar 20 12:58:51 2008

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