This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Sigma factor

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 34: Line 34:
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
 +
{{#tree:id=OrganizedByTopic|openlevels=0|
-
===Sigma factor===
+
*Sigma factor
-
[[1ku2]] – TaSF region 1.2-3.1 – ''Thermus aquaticus''<br />
+
**[[1ku2]] – TaSF region 1.2-3.1 – ''Thermus aquaticus''<br />
-
[[1ku3]] – TaSF region 4 (mutant)<br />
+
**[[1ku3]] – TaSF region 4 (mutant)<br />
-
[[3les]] – TaSF residues 93-271<br />
+
**[[3les]] – TaSF residues 93-271<br />
-
[[1sig]] – EcSF – ''Escherichia coli''<br />
+
**[[1sig]] – EcSF – ''Escherichia coli''<br />
-
[[2mao]] – EcSF region 2 - NMR<br />
+
**[[2mao]] – EcSF region 2 - NMR<br />
-
[[1tty]] – TmSF-70 region 4 – ''Thermotoga maritima''<br />
+
**[[1tty]] – TmSF-70 region 4 – ''Thermotoga maritima''<br />
-
[[1tty]] – TmSF-70 region 1.1 (mutant) - NMR<br />
+
**[[1tty]] – TmSF-70 region 1.1 (mutant) - NMR<br />
-
[[2ahq]] – AaSF-54 C terminal – ''Aquifex aeolicus'' - NMR<br />
+
**[[2ahq]] – AaSF-54 C terminal – ''Aquifex aeolicus'' - NMR<br />
-
[[2k9l]], [[2k9m]] – AaSF-54 core domain - NMR<br />
+
**[[2k9l]], [[2k9m]] – AaSF-54 core domain - NMR<br />
-
[[3mzy]] – SF-H – ''Fusobacterium nucleatum''<br />
+
**[[3mzy]] – SF-H – ''Fusobacterium nucleatum''<br />
-
===Sigma factor complex with DNA===
+
*Sigma factor complex with DNA
-
[[3ugo]], [[3ugp]] - TaSF region 2 + DNA<br />
+
**[[3ugo]], [[3ugp]] - TaSF region 2 + DNA<br />
-
[[4ki2]] - TaSF region 2-3 + DNA<br />
+
**[[4ki2]] - TaSF region 2-3 + DNA<br />
-
[[2h27]] – EcSF-E region 4 + DNA<br />
+
**[[2h27]] – EcSF-E region 4 + DNA<br />
-
[[2map]] – EcSF region 2 + DNA - NMR<br />
+
**[[2map]] – EcSF region 2 + DNA - NMR<br />
-
[[2o8k]], [[2o9l]] – AaSF-54 C terminal + DNA - NMR<br />
+
**[[2o8k]], [[2o9l]] – AaSF-54 C terminal + DNA - NMR<br />
-
===Sigma factor complex with protein===
+
*Sigma factor complex with protein
-
[[3lev]] – TaSF residues 93-271 + antibody<br />
+
**[[3lev]] – TaSF residues 93-271 + antibody<br />
-
[[1or7]] – EcSF-E + σ-E factor negative regulatory protein <br />
+
**[[1or7]] – EcSF-E + σ-E factor negative regulatory protein <br />
-
[[4lup]] – EcSF residues 3-92 + EcSF region 2 <br />
+
**[[4lup]] – EcSF residues 3-92 + EcSF region 2 <br />
-
[[1tlh]] – EcSF-70 region 4 + anti-σ factor<br />
+
**[[1tlh]] – EcSF-70 region 4 + anti-σ factor<br />
-
[[2p7v]] – EcSF-70 region 4 + regulator of σ D<br />
+
**[[2p7v]] – EcSF-70 region 4 + regulator of σ D<br />
-
[[1rp3]], [[1sc5]] – AaSF-28 + anti-σ factor FLGM <br />
+
**[[1rp3]], [[1sc5]] – AaSF-28 + anti-σ factor FLGM <br />
-
[[3hug]] – MtSF + membrane protein – ''Mycobacterium tuberculosis''<br />
+
**[[3hug]] – MtSF + membrane protein – ''Mycobacterium tuberculosis''<br />
-
[[4nqw]] – MtSF-K region 4 + anti-σ factor<br />
+
**[[4nqw]] – MtSF-K region 4 + anti-σ factor<br />
-
[[3wod]] – TtSF + RNAP subunits α,β,β’,ω - ''Thermus thermophilus'' <br />
+
**[[3wod]] – TtSF + RNAP subunits α,β,β’,ω - ''Thermus thermophilus'' <br />
-
[[4mq9]] – TtSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br />
+
**[[4mq9]] – TtSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br />
-
[[1l9u]] – TaSF region 1.1-4 + RNAP subunits α,β,β’,ω<br />
+
**[[1l9u]] – TaSF region 1.1-4 + RNAP subunits α,β,β’,ω<br />
-
[[4mex]] – EcSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br />
+
**[[4mex]] – EcSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br />
-
[[4mey]], [[4ljz]], [[4lk1]] – EcSF-70 + RNAP subunits α,β,β’,ω <br />
+
**[[4mey]], [[4ljz]], [[4lk1]] – EcSF-70 + RNAP subunits α,β,β’,ω <br />
-
[[4lk0]], [[4llg]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + RNAP inhibitor<br />
+
**[[4lk0]], [[4llg]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + RNAP inhibitor<br />
-
[[4cxf]] – SF CNRH + CNRY – ''Cupriavidus metallidurans''<br />
+
**[[4cxf]] – SF CNRH + CNRY – ''Cupriavidus metallidurans''<br />
-
[[4g6d]], [[4g8x]], [[4g94]] – SF-70 region 4 + Orf067 – ''Staphylococcus aureus''<br />
+
**[[4g6d]], [[4g8x]], [[4g94]] – SF-70 region 4 + Orf067 – ''Staphylococcus aureus''<br />
-
===Sigma factor complex with protein and DNA===
+
*Sigma factor complex with protein and DNA
-
 
+
-
[[1rio]] - TaSF region 4 + repression protein CI + DNA<br />
+
-
[[4oin]], [[4oip]], [[4oiq]], [[4oir]] – TtSF-A + RNAP subunits α,β,β’,ω + antibiotic + DNA<br />
+
-
[[4oio]] – TtSF-A + RNAP subunits α,β,β’,ω + DNA<br />
+
-
[[3n97]] – TaSF region 4 + RNAP subunits α + DNA<br />
+
-
[[1l9u]] – TaSF + RNAP subunits α,β,β’,ω + DNA – Cryo EM <br />
+
-
[[3iyd]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + catabolite gene activator + DNA<br />
+
 +
**[[1rio]] - TaSF region 4 + repression protein CI + DNA<br />
 +
**[[4oin]], [[4oip]], [[4oiq]], [[4oir]] – TtSF-A + RNAP subunits α,β,β’,ω + antibiotic + DNA<br />
 +
**[[4oio]] – TtSF-A + RNAP subunits α,β,β’,ω + DNA<br />
 +
**[[3n97]] – TaSF region 4 + RNAP subunits α + DNA<br />
 +
**[[1l9u]] – TaSF + RNAP subunits α,β,β’,ω + DNA – Cryo EM <br />
 +
**[[3iyd]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + catabolite gene activator + DNA<br />
 +
}}
== References ==
== References ==

Revision as of 10:20, 10 December 2014

Structure of sigma factor of E.Coli RNAP in complex with Promoter DNA (PDB code 4lup).

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

Wally Novak, Michal Harel

Retrieved from "http://52.214.119.220/wiki/index.php/Sigma_factor"
Personal tools