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3ah4

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{{STRUCTURE_3ah4| PDB=3ah4 | SCENE= }}
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==HA1 subcomponent of botulinum type C progenitor toxin complexed with galactose==
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===HA1 subcomponent of botulinum type C progenitor toxin complexed with galactose===
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<StructureSection load='3ah4' size='340' side='right' caption='[[3ah4]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
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{{ABSTRACT_PUBMED_18178224}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3ah4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_botulinum Clostridium botulinum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2ehn 2ehn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AH4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AH4 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1qxm|1qxm]], [[3ah1|3ah1]], [[3ah2|3ah2]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ah4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ah4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ah4 RCSB], [http://www.ebi.ac.uk/pdbsum/3ah4 PDBsum]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ah/3ah4_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Clostridium botulinum type C 16S progenitor toxin contains a hemagglutinin (HA) subcomponent, designated HA1, which appears to play an important role in the effective internalization of the toxin in gastrointestinal epithelial cells and in creating a broad specificity for the oligosaccharide structure that corresponds to various targets. In this study, using the recombinant protein fused to glutathione S-transferase, we investigated the binding specificity of the HA1 subcomponent to sugars and estimated the binding sites of HA1 based on X-ray crystallography and soaking experiments using various sugars. N-Acetylneuraminic acid, N-acetylgalactosamine, and galactose effectively inhibited the binding that occurs between glutathione S-transferase-HA1 and mucins, whereas N-acetylglucosamine and glucose did not inhibit it. The crystal structures of HA1 complex with N-acetylneuraminic acid, N-acetylgalactosamine, and galactose were also determined. There are two sugar-binding sites, sites I and II. Site I corresponds to the electron densities noted for all sugars and is located at the C-terminal beta-trefoil domain, while site II corresponds to the electron densities noted only for galactose. An aromatic amino acid residue, Trp176, at site I has a stacking interaction with the hexose ring of the sugars. On the other hand, there is no aromatic residue at site II; thus, the interaction with galactose seems to be poor. The double mutant W176A at site I and D271F at site II has no avidity for N-acetylneuraminic acid but has avidity for galactose. In this report, the binding specificity of botulinum C16S toxin HA1 to various sugars is demonstrated based on its structural features.
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==About this Structure==
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Sugar-binding sites of the HA1 subcomponent of Clostridium botulinum type C progenitor toxin.,Nakamura T, Tonozuka T, Ide A, Yuzawa T, Oguma K, Nishikawa A J Mol Biol. 2008 Feb 22;376(3):854-67. Epub 2007 Dec 23. PMID:18178224<ref>PMID:18178224</ref>
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[[3ah4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_botulinum Clostridium botulinum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2ehn 2ehn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AH4 OCA].
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
==See Also==
==See Also==
*[[Hemagglutinin|Hemagglutinin]]
*[[Hemagglutinin|Hemagglutinin]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:018178224</ref><ref group="xtra">PMID:017196748</ref><ref group="xtra">PMID:016413070</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
[[Category: Clostridium botulinum]]
[[Category: Clostridium botulinum]]
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[[Category: Ide, A.]]
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[[Category: Ide, A]]
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[[Category: Nakamura, T.]]
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[[Category: Nakamura, T]]
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[[Category: Nishikawa, A.]]
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[[Category: Nishikawa, A]]
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[[Category: Oguma, K.]]
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[[Category: Oguma, K]]
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[[Category: Tonozuka, T.]]
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[[Category: Tonozuka, T]]
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[[Category: Yuzawa, T.]]
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[[Category: Yuzawa, T]]
[[Category: Beta trefoil]]
[[Category: Beta trefoil]]
[[Category: Hemagglutinin]]
[[Category: Hemagglutinin]]
[[Category: Toxin]]
[[Category: Toxin]]

Revision as of 14:03, 17 December 2014

HA1 subcomponent of botulinum type C progenitor toxin complexed with galactose

3ah4, resolution 1.78Å

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